HL_7ASM_027

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

7ASM|1|A|U|1002, 7ASM|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0909

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ASM|1|A|U|999
7ASM|1|A|G|1000
7ASM|1|A|A|1001
7ASM|1|A|U|1002
7ASM|1|A|A|1003
7ASM|1|A|A|1004
7ASM|1|A|G|1005
7ASM|1|A|G|1006

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16