HL_7ASM_033

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7ASM|1|A|C|1362, 7ASM|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_033 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0721

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

7ASM|1|A|G|1361
7ASM|1|A|C|1362
7ASM|1|A|U|1363
7ASM|1|A|C|1364
7ASM|1|A|G|1365
7ASM|1|A|U|1366
7ASM|1|A|C|1367

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22