HL_7ASM_039

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

7ASM|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0918

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|A|1673
7ASM|1|A|U|1674
7ASM|1|A|G|1675
7ASM|1|A|A|1676
7ASM|1|A|G|1677
7ASM|1|A|A|1678
7ASM|1|A|A|1679
7ASM|1|A|U|1680
7ASM|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains