HL_7ASM_047

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7ASM|1|A|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0778

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|G|1976
7ASM|1|A|G|1977
7ASM|1|A|U|1978
7ASM|1|A|A|1979
7ASM|1|A|A|1980
7ASM|1|A|G|1981
7ASM|1|A|U|1982
7ASM|1|A|U|1983
7ASM|1|A|C|1984

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L14