HL_7ASM_064

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7ASM|1|A|G|2778, 7ASM|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASM_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0976

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ASM|1|A|C|2772
7ASM|1|A|U|2773
7ASM|1|A|G|2774
7ASM|1|A|A|2775
7ASM|1|A|A|2776
7ASM|1|A|A|2777
7ASM|1|A|G|2778
7ASM|1|A|C|2779
7ASM|1|A|A|2780
7ASM|1|A|U|2781
7ASM|1|A|C|2782
7ASM|1|A|U|2783
7ASM|1|A|A|2784
7ASM|1|A|A|2785
7ASM|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain H

50S ribosomal protein L13