HL_7ASN_030

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7ASN|1|A|C|1362, 7ASN|1|A|U|1366

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASN_030 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0847

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7ASN|1|A|G|1361
7ASN|1|A|C|1362
7ASN|1|A|U|1363
7ASN|1|A|C|1364
7ASN|1|A|G|1365
7ASN|1|A|U|1366
7ASN|1|A|C|1367

Current chains

Chain A

23S

Nearby chains

Chain Q

50S ribosomal protein L22