RNA 3D Hub //

7ASN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ASN_0061/A/197:204No text annotation
geometric
HL_7RQB_006
NA
HL_7ASN_0671/A/428:438No text annotation
homologous
HL_5J7L_145
NA
HL_7ASN_0131/A/508:513GNRA
homologous
HL_7RQB_015
NA
HL_7ASN_0181/A/674:679GNRA
homologous
HL_7RQB_020
NA
HL_7ASN_0691/A/824:830No text annotation
homologous
HL_4WF9_024
HL_92935.1
HL_7ASN_0231/A/871:876No text annotation
homologous
HL_7RQB_025
NA
HL_7ASN_0411/A/1833:1838GNRA
homologous
HL_7RQB_046
NA
HL_7ASN_0451/A/2054:2063No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_7ASN_0481/A/2275:2283No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_7ASN_0491/A/2291:2303No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_7ASN_0511/A/2351:2358Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_7ASN_0521/A/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_7ASN_0531/A/2401:2406GNRA
homologous
HL_5J7L_191
NA
HL_7ASN_0771/A/2723:2741No text annotation
HL_7ASN_0631/A/2865:2890No text annotation

Problematic loops

#loop idProblemSequence
HL_7ASN_001No text annotation
HL_7ASN_066No text annotation
HL_7ASN_002No text annotation
HL_7ASN_078No text annotation
HL_7ASN_003No text annotation
HL_7ASN_004GNRA wlth tandem sheared
HL_7ASN_005No text annotation
HL_7ASN_007No text annotation
HL_7ASN_008T-loop with 1 bulged base
HL_7ASN_009No text annotation
HL_7ASN_010T-loop with unstacked turn
HL_7ASN_011No text annotation
HL_7ASN_012Pseudoknot geometry
HL_7ASN_014GNRA
HL_7ASN_015No text annotation
HL_7ASN_016T-loop with 2 stacked bulged bases
HL_7ASN_017No text annotation
HL_7ASN_068GNRA
HL_7ASN_019No text annotation
HL_7ASN_079No text annotation
HL_7ASN_020No text annotation
HL_7ASN_021No text annotation
HL_7ASN_022No text annotation
HL_7ASN_024No text annotation
HL_7ASN_025GNRA
HL_7ASN_026No text annotation
HL_7ASN_070No text annotation
HL_7ASN_027No text annotation
HL_7ASN_028GNRA
HL_7ASN_029No text annotation
HL_7ASN_030Pseudoknot geometry with 3' bulge
HL_7ASN_031GNRA
HL_7ASN_032No text annotation
HL_7ASN_071No text annotation
HL_7ASN_033No text annotation
HL_7ASN_034Mini UNCG
HL_7ASN_035No text annotation
HL_7ASN_036Purine riboswitch
HL_7ASN_037UNCG
HL_7ASN_072No text annotation
HL_7ASN_038No text annotation
HL_7ASN_039No text annotation
HL_7ASN_040No text annotation
HL_7ASN_073No text annotation
HL_7ASN_042No text annotation
HL_7ASN_043No text annotation
HL_7ASN_080No text annotation
HL_7ASN_044tRNA D-loop
HL_7ASN_046No text annotation
HL_7ASN_047No text annotation
HL_7ASN_050No text annotation
HL_7ASN_074No text annotation
HL_7ASN_054No text annotation
HL_7ASN_075No text annotation
HL_7ASN_055No text annotation
HL_7ASN_056No text annotation
HL_7ASN_076GNRA variation
HL_7ASN_057No text annotation
HL_7ASN_058GNRA
HL_7ASN_059GNRA
HL_7ASN_060No text annotation
HL_7ASN_061No text annotation
HL_7ASN_062No text annotation
HL_7ASN_064No text annotation
HL_7ASN_065No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ASN_0031/A/42:44,
1/A/480:483		Minor groove platform with extra cWW
homologous
IL_4WF9_003
IL_82096.1
IL_7ASN_0161/A/638:640,
1/A/705:707		Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_71625.3
IL_7ASN_0181/A/717:719,
1/A/851:853		No text annotation
geometric
IL_7RQB_017
NA
IL_7ASN_0191/A/719:723,
1/A/844:851		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.1
IL_7ASN_0201/A/742:743,
1/A/808:810		Single bulged A
homologous
IL_4WF9_022
IL_14190.2
IL_7ASN_0231/A/820:822,
1/A/832:836		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_7ASN_0241/A/881:883,
1/A/984:987		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_7ASN_0281/A/909:913,
1/A/954:957		C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_7ASN_0371/A/1211:1214,
1/A/1218:1221		No text annotation
IL_7ASN_0421/A/1300:1307,
1/A/2038:2044		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_62167.3
IL_7ASN_1141/A/1388:1390,
1/A/1416:1417		Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
IL_75501.2
IL_7ASN_0441/A/1388:1392,
1/A/1413:1417		UAA/GAN
homologous
IL_5J7L_292
NA
IL_7ASN_1151/A/1390:1392,
1/A/1413:1416		No text annotation
IL_7ASN_0531/A/1825:1831,
1/A/1840:1848		Kink-turn related
homologous
IL_7RQB_070
NA
IL_7ASN_0591/A/2097:2098,
1/A/2465:2468		Minor groove platform
homologous
IL_4WF9_081
IL_34520.3
IL_7ASN_0651/A/2377:2380,
1/A/2391:2394		Double sheared
homologous
IL_5J7L_333
NA
IL_7ASN_0831/A/2723:2726,
1/A/2736:2741		Tandem non-canonical cWW pairs
geometric
IL_4K27_002
IL_71194.2

Problematic loops

#loop idProblemSequence
IL_7ASN_001Triple sheared with non-canonical cWW
IL_7ASN_002Single bulged A
IL_7ASN_093No text annotation
IL_7ASN_004Kink-turn
IL_7ASN_005Multiple bulged bases
IL_7ASN_094No text annotation
IL_7ASN_006Major groove platform
IL_7ASN_095No text annotation
IL_7ASN_0079x8 Sarcin-Ricin; G-bulge
IL_7ASN_0088x7 Sarcin-Ricin; G-bulge
IL_7ASN_009No text annotation
IL_7ASN_096No text annotation
IL_7ASN_010No text annotation
IL_7ASN_110No text annotation
IL_7ASN_097No text annotation
IL_7ASN_011No text annotation
IL_7ASN_098No text annotation
IL_7ASN_012No text annotation
IL_7ASN_111No text annotation
IL_7ASN_013No text annotation
IL_7ASN_014Double sheared
IL_7ASN_015Isolated non-canonical cWW pair
IL_7ASN_017AAA cross-strand stack
IL_7ASN_099No text annotation
IL_7ASN_021No text annotation
IL_7ASN_022Major groove platform
IL_7ASN_025No text annotation
IL_7ASN_112No text annotation
IL_7ASN_026No text annotation
IL_7ASN_027No text annotation
IL_7ASN_029Single bulged C
IL_7ASN_030UAA/GAN
IL_7ASN_031SSU/LSU pseudoknot
IL_7ASN_100Single bulged U
IL_7ASN_032Isolated cWH basepair
IL_7ASN_033No text annotation
IL_7ASN_101No text annotation
IL_7ASN_034Isolated non-canonical cWW pair
IL_7ASN_035No text annotation
IL_7ASN_102No text annotation
IL_7ASN_113No text annotation
IL_7ASN_036No text annotation
IL_7ASN_038Isolated cWS basepair
IL_7ASN_039Isolated cWH basepair
IL_7ASN_040Kink-turn
IL_7ASN_041Intercalated cWW
IL_7ASN_043Major groove minor groove platform with tHH
IL_7ASN_045tSH-tHW-tHS
IL_7ASN_103No text annotation
IL_7ASN_116No text annotation
IL_7ASN_046No text annotation
IL_7ASN_047No text annotation
IL_7ASN_048No text annotation
IL_7ASN_049Isolated tWW turn
IL_7ASN_050Major groove platform; stack outside cWW
IL_7ASN_051tSH-tSH-tHH-tHS
IL_7ASN_052No text annotation
IL_7ASN_054No text annotation
IL_7ASN_055No text annotation
IL_7ASN_056Major groove platform
IL_7ASN_057No text annotation
IL_7ASN_058Single bulged U
IL_7ASN_060Isolated tHS basepair with bulges
IL_7ASN_061Tandem non-canonical cWW pairs
IL_7ASN_062No text annotation
IL_7ASN_063No text annotation
IL_7ASN_064Single bulged G
IL_7ASN_066Single bulged U
IL_7ASN_067Single stack bend
IL_7ASN_068Major groove platform
IL_7ASN_069No text annotation
IL_7ASN_070Tandem non-canonical cWW pairs
IL_7ASN_104Isolated non-canonical cWW pair
IL_7ASN_071No text annotation
IL_7ASN_072Major groove platform
IL_7ASN_073Isolated non-canonical cWW with bulges
IL_7ASN_074No text annotation
IL_7ASN_105No text annotation
IL_7ASN_075Major groove platform with intercalation
IL_7ASN_076Major groove platform
IL_7ASN_077No text annotation
IL_7ASN_106No text annotation
IL_7ASN_078No text annotation
IL_7ASN_079No text annotation
IL_7ASN_080C-loop with extra cWW pair
IL_7ASN_081No text annotation
IL_7ASN_082No text annotation
IL_7ASN_084No text annotation
IL_7ASN_107Isolated cWS basepair
IL_7ASN_085Isolated non-canonical cWW pair
IL_7ASN_086No text annotation
IL_7ASN_108No text annotation
IL_7ASN_087Major groove intercalation
IL_7ASN_088No text annotation
IL_7ASN_109No text annotation
IL_7ASN_089No text annotation
IL_7ASN_090Symmetric double minor groove platform
IL_7ASN_091No text annotation
IL_7ASN_092Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ASN_0031/A/728:734,
1/A/818:820,
1/A/836:839		No text annotation
homologous
J3_5J7L_038
NA
J3_7ASN_0041/A/743:745,
1/A/777:781,
1/A/805:808		No text annotation
homologous
J3_5J7L_039
NA
J3_7ASN_0051/A/1335:1340,
1/A/1669:1671,
1/A/1683:1686		No text annotation
homologous
J3_4WF9_004
J3_32852.7
J3_7ASN_0061/A/1342:1346,
1/A/1649:1655,
1/A/1664:1667		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_7ASN_0171/A/2309:2311,
1/A/2411:2422,
1/A/2448:2454		No text annotation
homologous
J3_5J7L_070
NA
J4_7ASN_0031/A/644:647,
1/A/669:673,
1/A/680:683,
1/A/695:701		No text annotation
homologous
J4_5J7L_020
NA
J4_7ASN_0061/A/1797:1803,
1/A/1815:1819,
1/A/1854:1857,
1/A/2002:2009		No text annotation
J4_7ASN_0081/A/2312:2316,
1/A/2370:2374,
1/A/2397:2399,
1/A/2408:2410		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J5_7ASN_0031/A/627:632,
1/A/713:716,
1/A/854:857,
1/A/1234:1235,
1/A/1288:1294		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_7ASN_0061/A/2084:2091,
1/A/2473:2480,
1/A/2527:2534,
1/A/2609:2615,
1/A/2633:2638		No text annotation
J5_7ASN_0071/A/2101:2104,
1/A/2270:2273,
1/A/2285:2286,
1/A/2308:2309,
1/A/2454:2462		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_7ASN_0011/A/2101:2104,
1/A/2270:2273,
1/A/2285:2286,
1/A/2308:2311,
1/A/2411:2422,
1/A/2448:2462		No text annotation
J7_7ASN_0011/A/862:867,
1/A/880:881,
1/A/987:990,
1/A/1015:1020,
1/A/1031:1035,
1/A/1207:1208,
1/A/1224:1229		No text annotation
J10_7ASN_0011/A/5:15,
1/A/570:578,
1/A/603:607,
1/A/620:622,
1/A/1299:1300,
1/A/2044:2050,
1/A/2067:2070,
1/A/2652:2657,
1/A/2815:2831,
1/A/2908:2916		No text annotation

Problematic loops

#loop idProblemSequence
J3_7ASN_001No text annotation
J3_7ASN_011No text annotation
J3_7ASN_012No text annotation
J3_7ASN_002No text annotation
J3_7ASN_013No text annotation
J3_7ASN_020No text annotation
J3_7ASN_014No text annotation
J3_7ASN_015No text annotation
J3_7ASN_007No text annotation
J3_7ASN_016No text annotation
J3_7ASN_018No text annotation
J3_7ASN_008No text annotation
J3_7ASN_009No text annotation
J3_7ASN_019No text annotation
J3_7ASN_010No text annotation
J4_7ASN_001No text annotation
J4_7ASN_002No text annotation
J4_7ASN_004No text annotation
J4_7ASN_005No text annotation
J4_7ASN_007No text annotation
J4_7ASN_009No text annotation
J5_7ASN_008No text annotation
J5_7ASN_001No text annotation
J5_7ASN_002No text annotation
J5_7ASN_004No text annotation
J5_7ASN_005No text annotation

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