HL_7ASO_025

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_025 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.4462

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ASO|1|X|C|1527
7ASO|1|X|G|1528
7ASO|1|X|G|1529
7ASO|1|X|A|1530
7ASO|1|X|A|1531
7ASO|1|X|G|1532

Current chains

Chain X

16S

Nearby chains

Chain Y

Large subunit ribosomal RNA; LSU rRNA