7ASO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7ASO_002 | 1/C/79:92 | No text annotation | ||
HL_7ASO_110 | 1/Y/59:68 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_17803.1 | |
HL_7ASO_026 | 1/Y/67:74 | No text annotation | homologous HL_4WF9_001 HL_08550.1 | |
HL_7ASO_027 | 1/Y/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
HL_7ASO_028 | 1/Y/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
HL_7ASO_030 | 1/Y/152:177 | No text annotation | ||
HL_7ASO_031 | 1/Y/197:204 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
HL_7ASO_032 | 1/Y/228:233 | No text annotation | ||
HL_7ASO_033 | 1/Y/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
HL_7ASO_035 | 1/Y/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.1 | |
HL_7ASO_036 | 1/Y/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
HL_7ASO_037 | 1/Y/427:439 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
HL_7ASO_038 | 1/Y/456:463 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.4 | |
HL_7ASO_039 | 1/Y/508:513 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
HL_7ASO_040 | 1/Y/533:538 | GNRA | homologous HL_7RQB_016 NA | |
HL_7ASO_041 | 1/Y/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
HL_7ASO_042 | 1/Y/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.1 | |
HL_7ASO_043 | 1/Y/654:662 | Other HL | homologous HL_4WF9_019 HL_63894.1 | |
HL_7ASO_044 | 1/Y/674:679 | GNRA | homologous HL_7RQB_020 NA | |
HL_7ASO_046 | 1/Y/747:775 | No text annotation | ||
HL_7ASO_047 | 1/Y/789:798 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
HL_7ASO_112 | 1/Y/824:830 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
HL_7ASO_049 | 1/Y/871:876 | No text annotation | homologous HL_7RQB_025 NA | |
HL_7ASO_105 | 1/Y/999:1006 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
HL_7ASO_052 | 1/Y/1022:1029 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
HL_7ASO_053 | 1/Y/1083:1160 | No text annotation | ||
HL_7ASO_054 | 1/Y/1211:1221 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
HL_7ASO_055 | 1/Y/1260:1265 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
HL_7ASO_056 | 1/Y/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
HL_7ASO_057 | 1/Y/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
HL_7ASO_058 | 1/Y/1400:1405 | GNRA | homologous HL_5J7L_167 NA | |
HL_7ASO_059 | 1/Y/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
HL_7ASO_061 | 1/Y/1612:1615 | Mini UNCG | homologous HL_5J7L_172 NA | |
HL_7ASO_062 | 1/Y/1656:1663 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
HL_7ASO_063 | 1/Y/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_45359.1 | |
HL_7ASO_064 | 1/Y/1735:1740 | UNCG | geometric HL_4LFB_009 HL_61337.1 | |
HL_7ASO_066 | 1/Y/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
HL_7ASO_067 | 1/Y/1804:1814 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
HL_7ASO_068 | 1/Y/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
HL_7ASO_070 | 1/Y/1976:1984 | No text annotation | homologous HL_5J7L_182 NA | |
HL_7ASO_071 | 1/Y/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
HL_7ASO_074 | 1/Y/2275:2283 | No text annotation | homologous HL_5J7L_186 NA | |
HL_7ASO_075 | 1/Y/2291:2303 | No text annotation | homologous HL_5J7L_187 NA | |
HL_7ASO_077 | 1/Y/2350:2359 | tRNA anticodon loop | geometric HL_8H1B_001 HL_46665.1 | |
HL_7ASO_078 | 1/Y/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
HL_7ASO_079 | 1/Y/2401:2406 | GNRA | homologous HL_4WF9_054 HL_34789.1 | |
HL_7ASO_107 | 1/Y/2425:2445 | No text annotation | ||
HL_7ASO_080 | 1/Y/2431:2440 | No text annotation | homologous HL_4WF9_055 HL_51853.1 | |
HL_7ASO_108 | 1/Y/2552:2565 | No text annotation | ||
HL_7ASO_083 | 1/Y/2578:2584 | No text annotation | homologous HL_5J7L_195 NA | |
HL_7ASO_084 | 1/Y/2621:2626 | GNRA | homologous HL_5J7L_196 NA | |
HL_7ASO_086 | 1/Y/2727:2734 | No text annotation | geometric HL_5TBW_012 NA | |
HL_7ASO_088 | 1/Y/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_37889.1 | |
HL_7ASO_089 | 1/Y/2876:2881 | GNRA | homologous HL_7A0S_068 HL_34789.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7ASO_001 | No text annotation | ||
HL_7ASO_003 | No text annotation | ||
HL_7ASO_004 | No text annotation | ||
HL_7ASO_090 | No text annotation | ||
HL_7ASO_005 | No text annotation | ||
HL_7ASO_091 | No text annotation | ||
HL_7ASO_006 | GNRA related | ||
HL_7ASO_092 | No text annotation | ||
HL_7ASO_007 | GNRA | ||
HL_7ASO_093 | No text annotation | ||
HL_7ASO_008 | No text annotation | ||
HL_7ASO_094 | No text annotation | ||
HL_7ASO_009 | GNRA | ||
HL_7ASO_010 | No text annotation | ||
HL_7ASO_011 | No text annotation | ||
HL_7ASO_012 | No text annotation | ||
HL_7ASO_013 | No text annotation | ||
HL_7ASO_014 | No text annotation | ||
HL_7ASO_015 | No text annotation | ||
HL_7ASO_095 | GNRA | ||
HL_7ASO_016 | tRNA D-loop | ||
HL_7ASO_096 | No text annotation | ||
HL_7ASO_017 | No text annotation | ||
HL_7ASO_018 | No text annotation | ||
HL_7ASO_097 | No text annotation | ||
HL_7ASO_019 | No text annotation | ||
HL_7ASO_020 | No text annotation | ||
HL_7ASO_021 | No text annotation | ||
HL_7ASO_022 | No text annotation | ||
HL_7ASO_023 | No text annotation | ||
HL_7ASO_024 | No text annotation | ||
HL_7ASO_098 | No text annotation | ||
HL_7ASO_109 | No text annotation | ||
HL_7ASO_025 | GNRA | ||
HL_7ASO_099 | No text annotation | ||
HL_7ASO_029 | No text annotation | ||
HL_7ASO_111 | GNRA wlth tandem sheared | ||
HL_7ASO_100 | No text annotation | ||
HL_7ASO_034 | No text annotation | ||
HL_7ASO_101 | No text annotation | ||
HL_7ASO_045 | No text annotation | ||
HL_7ASO_102 | No text annotation | ||
HL_7ASO_103 | No text annotation | ||
HL_7ASO_048 | No text annotation | ||
HL_7ASO_104 | No text annotation | ||
HL_7ASO_050 | No text annotation | ||
HL_7ASO_051 | tRNA anticodon loop | ||
HL_7ASO_060 | No text annotation | ||
HL_7ASO_065 | No text annotation | ||
HL_7ASO_069 | No text annotation | ||
HL_7ASO_072 | No text annotation | ||
HL_7ASO_073 | No text annotation | ||
HL_7ASO_106 | Anticodon loop related | ||
HL_7ASO_076 | No text annotation | ||
HL_7ASO_081 | No text annotation | ||
HL_7ASO_082 | No text annotation | ||
HL_7ASO_085 | No text annotation | ||
HL_7ASO_087 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7ASO_114 | 1/C/5:16, 1/C/63:110 | No text annotation | ||
IL_7ASO_155 | 1/X/523:529, 1/X/536:544 | Kink-turn related | homologous IL_6CZR_133 NA | |
IL_7ASO_030 | 1/Y/24:30, 1/Y/555:561 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
IL_7ASO_031 | 1/Y/36:37, 1/Y/488:490 | Single bulged A | homologous IL_7A0S_002 IL_14190.1 | |
IL_7ASO_032 | 1/Y/42:44, 1/Y/480:483 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
IL_7ASO_034 | 1/Y/186:187, 1/Y/215:217 | Single stack bend | homologous IL_5J7L_249 NA | |
IL_7ASO_035 | 1/Y/190:197, 1/Y/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.1 | |
IL_7ASO_036 | 1/Y/241:248, 1/Y/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
IL_7ASO_039 | 1/Y/527:530, 1/Y/541:554 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
IL_7ASO_040 | 1/Y/581:584, 1/Y/597:600 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
IL_7ASO_041 | 1/Y/607:609, 1/Y/618:620 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
IL_7ASO_042 | 1/Y/638:640, 1/Y/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
IL_7ASO_043 | 1/Y/649:653, 1/Y/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
IL_7ASO_044 | 1/Y/717:719, 1/Y/851:853 | No text annotation | geometric IL_7RQB_017 NA | |
IL_7ASO_045 | 1/Y/719:723, 1/Y/844:851 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
IL_7ASO_046 | 1/Y/742:743, 1/Y/808:810 | Single bulged A | homologous IL_5J7L_261 NA | |
IL_7ASO_047 | 1/Y/783:785, 1/Y/802:803 | Major groove platform | homologous IL_5J7L_264 NA | |
IL_7ASO_048 | 1/Y/820:822, 1/Y/832:836 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
IL_7ASO_049 | 1/Y/882:883, 1/Y/984:986 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
IL_7ASO_050 | 1/Y/889:893, 1/Y/975:978 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
IL_7ASO_051 | 1/Y/897:898, 1/Y/969:971 | Single bulged U | homologous IL_4WF9_030 IL_97561.1 | |
IL_7ASO_052 | 1/Y/901:907, 1/Y/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4WF9_031 IL_94128.1 | |
IL_7ASO_053 | 1/Y/907:908, 1/Y/958:960 | Minor groove platform | geometric IL_7RQB_028 NA | |
IL_7ASO_054 | 1/Y/909:913, 1/Y/954:957 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
IL_7ASO_055 | 1/Y/1038:1040, 1/Y/1203:1204 | Single bulged C | homologous IL_7RQB_035 NA | |
IL_7ASO_056 | 1/Y/1042:1046, 1/Y/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
IL_7ASO_137 | 1/Y/1042:1055, 1/Y/1194:1201 | No text annotation | ||
IL_7ASO_057 | 1/Y/1048:1055, 1/Y/1194:1195 | SSU/LSU pseudoknot | geometric IL_7A0S_034 IL_11411.1 | |
IL_7ASO_058 | 1/Y/1055:1057, 1/Y/1193:1194 | Single bulged U | homologous IL_5J7L_279 NA | |
IL_7ASO_059 | 1/Y/1062:1068, 1/Y/1184:1188 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
IL_7ASO_157 | 1/Y/1062:1074, 1/Y/1168:1188 | No text annotation | ||
IL_7ASO_060 | 1/Y/1068:1074, 1/Y/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
IL_7ASO_061 | 1/Y/1075:1078, 1/Y/1165:1167 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_30229.1 | |
IL_7ASO_063 | 1/Y/1235:1237, 1/Y/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
IL_7ASO_064 | 1/Y/1243:1245, 1/Y/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.1 | |
IL_7ASO_065 | 1/Y/1246:1253, 1/Y/1272:1276 | Kink-turn | homologous IL_7RQB_047 NA | |
IL_7ASO_066 | 1/Y/1257:1259, 1/Y/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
IL_7ASO_067 | 1/Y/1300:1307, 1/Y/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
IL_7ASO_068 | 1/Y/1356:1360, 1/Y/1368:1370 | No text annotation | ||
IL_7ASO_069 | 1/Y/1388:1392, 1/Y/1413:1417 | UAA/GAN | homologous IL_4WF9_051 IL_89021.3 | |
IL_7ASO_070 | 1/Y/1394:1398, 1/Y/1407:1411 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
IL_7ASO_071 | 1/Y/1695:1700, 1/Y/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
IL_7ASO_072 | 1/Y/1707:1709, 1/Y/2022:2024 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
IL_7ASO_073 | 1/Y/1710:1713, 1/Y/2020:2021 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.1 | |
IL_7ASO_143 | 1/Y/1710:1718, 1/Y/2017:2021 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
IL_7ASO_074 | 1/Y/1713:1718, 1/Y/2017:2020 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
IL_7ASO_075 | 1/Y/1730:1735, 1/Y/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
IL_7ASO_076 | 1/Y/1797:1798, 1/Y/2007:2009 | Single bulged A | homologous IL_5J7L_312 NA | |
IL_7ASO_077 | 1/Y/1825:1831, 1/Y/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_7ASO_078 | 1/Y/1864:1867, 1/Y/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
IL_7ASO_079 | 1/Y/1868:1869, 1/Y/1925:1928 | Major groove intercalation | homologous IL_4WF9_071 IL_78536.1 | |
IL_7ASO_158 | 1/Y/1878:1883, 1/Y/1913:1918 | No text annotation | ||
IL_7ASO_082 | 1/Y/1960:1961, 1/Y/1991:1994 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.1 | |
IL_7ASO_083 | 1/Y/1961:1972, 1/Y/1988:1991 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
IL_7ASO_084 | 1/Y/2077:2079, 1/Y/2644:2645 | Major groove platform | homologous IL_7A0S_073 IL_48076.7 | |
IL_7ASO_085 | 1/Y/2081:2083, 1/Y/2639:2642 | No text annotation | homologous IL_5J7L_321 NA | |
IL_7ASO_086 | 1/Y/2094:2096, 1/Y/2469:2470 | Single bulged U | homologous IL_7RQB_080 NA | |
IL_7ASO_087 | 1/Y/2097:2098, 1/Y/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
IL_7ASO_088 | 1/Y/2108:2110, 1/Y/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.1 | |
IL_7ASO_089 | 1/Y/2111:2113, 1/Y/2260:2262 | Isolated non-canonical cWW pair | homologous IL_4WF9_083 IL_01003.1 | |
IL_7ASO_148 | 1/Y/2118:2120, 1/Y/2223:2255 | No text annotation | ||
IL_7ASO_092 | 1/Y/2229:2236, 1/Y/2242:2248 | No text annotation | ||
IL_7ASO_150 | 1/Y/2310:2324, 1/Y/2348:2352 | No text annotation | ||
IL_7ASO_094 | 1/Y/2377:2380, 1/Y/2391:2394 | Double sheared | homologous IL_5J7L_333 NA | |
IL_7ASO_095 | 1/Y/2426:2431, 1/Y/2440:2444 | No text annotation | ||
IL_7ASO_096 | 1/Y/2480:2481, 1/Y/2525:2527 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
IL_7ASO_097 | 1/Y/2481:2482, 1/Y/2523:2525 | Major groove platform | geometric IL_4V9F_082 IL_48076.7 | |
IL_7ASO_098 | 1/Y/2484:2486, 1/Y/2520:2521 | Major groove platform | homologous IL_7A0S_085 IL_48076.7 | |
IL_7ASO_099 | 1/Y/2486:2488, 1/Y/2516:2520 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
IL_7ASO_100 | 1/Y/2493:2497, 1/Y/2507:2511 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
IL_7ASO_151 | 1/Y/2534:2535, 1/Y/2607:2609 | Major groove platform | homologous IL_4WF9_094 IL_46637.1 | |
IL_7ASO_102 | 1/Y/2537:2539, 1/Y/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.1 | |
IL_7ASO_160 | 1/Y/2537:2540, 1/Y/2598:2605 | No text annotation | ||
IL_7ASO_103 | 1/Y/2539:2540, 1/Y/2598:2601 | No text annotation | geometric IL_4WF9_096 IL_44609.1 | |
IL_7ASO_161 | 1/Y/2549:2550, 1/Y/2567:2570 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
IL_7ASO_105 | 1/Y/2618:2619, 1/Y/2628:2630 | Major groove platform | geometric IL_4LFB_028 IL_48076.7 | |
IL_7ASO_106 | 1/Y/2663:2667, 1/Y/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
IL_7ASO_107 | 1/Y/2707:2711, 1/Y/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.12 | |
IL_7ASO_108 | 1/Y/2714:2718, 1/Y/2745:2749 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
IL_7ASO_109 | 1/Y/2722:2723, 1/Y/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
IL_7ASO_162 | 1/Y/2764:2769, 1/Y/2789:2794 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
IL_7ASO_111 | 1/Y/2858:2859, 1/Y/2898:2900 | Major groove intercalation | homologous IL_5J7L_352 NA | |
IL_7ASO_112 | 1/Y/2863:2865, 1/Y/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
IL_7ASO_113 | 1/Y/2867:2872, 1/Y/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7ASO_001 | Isolated non-canonical cWW pair | ||
IL_7ASO_115 | No text annotation | ||
IL_7ASO_002 | No text annotation | ||
IL_7ASO_003 | No text annotation | ||
IL_7ASO_004 | No text annotation | ||
IL_7ASO_116 | No text annotation | ||
IL_7ASO_005 | No text annotation | ||
IL_7ASO_006 | No text annotation | ||
IL_7ASO_117 | No text annotation | ||
IL_7ASO_007 | No text annotation | ||
IL_7ASO_118 | No text annotation | ||
IL_7ASO_008 | No text annotation | ||
IL_7ASO_009 | Single stack bend | ||
IL_7ASO_010 | Major groove platform with extra cWW | ||
IL_7ASO_011 | No text annotation | ||
IL_7ASO_119 | No text annotation | ||
IL_7ASO_012 | No text annotation | ||
IL_7ASO_013 | No text annotation | ||
IL_7ASO_120 | No text annotation | ||
IL_7ASO_014 | No text annotation | ||
IL_7ASO_015 | No text annotation | ||
IL_7ASO_016 | No text annotation | ||
IL_7ASO_121 | No text annotation | ||
IL_7ASO_017 | No text annotation | ||
IL_7ASO_122 | No text annotation | ||
IL_7ASO_018 | No text annotation | ||
IL_7ASO_019 | No text annotation | ||
IL_7ASO_123 | No text annotation | ||
IL_7ASO_020 | No text annotation | ||
IL_7ASO_021 | No text annotation | ||
IL_7ASO_022 | No text annotation | ||
IL_7ASO_124 | No text annotation | ||
IL_7ASO_023 | No text annotation | ||
IL_7ASO_125 | No text annotation | ||
IL_7ASO_024 | Major groove platform | ||
IL_7ASO_025 | UAA/GAN variation | ||
IL_7ASO_026 | Isolated non-canonical cWW pair | ||
IL_7ASO_027 | No text annotation | ||
IL_7ASO_028 | No text annotation | ||
IL_7ASO_029 | Tandem non-canonical cWW pairs | ||
IL_7ASO_126 | No text annotation | ||
IL_7ASO_033 | No text annotation | ||
IL_7ASO_127 | No text annotation | ||
IL_7ASO_156 | No text annotation | ||
IL_7ASO_037 | No text annotation | ||
IL_7ASO_128 | No text annotation | ||
IL_7ASO_129 | No text annotation | ||
IL_7ASO_038 | No text annotation | ||
IL_7ASO_130 | Double sheared with non-canonical cWW | ||
IL_7ASO_131 | Partly complementary | ||
IL_7ASO_132 | No text annotation | ||
IL_7ASO_133 | Isolated non-canonical cWW pair | ||
IL_7ASO_134 | No text annotation | ||
IL_7ASO_135 | Isolated non-canonical cWW pair | ||
IL_7ASO_136 | No text annotation | ||
IL_7ASO_138 | Isolated non-canonical cWW pair | ||
IL_7ASO_139 | No text annotation | ||
IL_7ASO_062 | Isolated non-canonical cWW pair | ||
IL_7ASO_140 | No text annotation | ||
IL_7ASO_141 | No text annotation | ||
IL_7ASO_142 | No text annotation | ||
IL_7ASO_144 | Isolated non-canonical cWW pair | ||
IL_7ASO_145 | No text annotation | ||
IL_7ASO_080 | Major groove minor groove platform; mini C-loop | ||
IL_7ASO_081 | No text annotation | ||
IL_7ASO_146 | No text annotation | ||
IL_7ASO_147 | Tandem non-canonical cWW pairs | ||
IL_7ASO_149 | Isolated non-canonical cWW pair | ||
IL_7ASO_090 | Tandem non-canonical cWW pairs | ||
IL_7ASO_091 | No text annotation | ||
IL_7ASO_159 | No text annotation | ||
IL_7ASO_093 | No text annotation | ||
IL_7ASO_101 | Major groove platform with extra pair | ||
IL_7ASO_152 | No text annotation | ||
IL_7ASO_104 | No text annotation | ||
IL_7ASO_153 | No text annotation | ||
IL_7ASO_154 | No text annotation | ||
IL_7ASO_110 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7ASO_001 | 1/X/37:41, 1/X/410:510, 1/X/552:556 | No text annotation | ||
J3_7ASO_034 | 1/X/37:41, 1/X/410:519, 1/X/548:556 | No text annotation | ||
J3_7ASO_006 | 1/Y/30:31, 1/Y/520:527, 1/Y/554:555 | No text annotation | homologous J3_7A0S_001 J3_68715.1 | |
J3_7ASO_024 | 1/Y/30:31, 1/Y/520:530, 1/Y/541:555 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
J3_7ASO_025 | 1/Y/32:35, 1/Y/491:507, 1/Y/514:519 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
J3_7ASO_037 | 1/Y/56:57, 1/Y/70:76, 1/Y/109:113 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
J3_7ASO_007 | 1/Y/56:67, 1/Y/74:76, 1/Y/109:113 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
J3_7ASO_008 | 1/Y/272:276, 1/Y/295:302, 1/Y/415:416 | No text annotation | homologous J3_7RQB_003 NA | |
J3_7ASO_027 | 1/Y/338:344, 1/Y/359:368, 1/Y/380:386 | No text annotation | ||
J3_7ASO_009 | 1/Y/728:734, 1/Y/818:820, 1/Y/836:839 | No text annotation | homologous J3_5J7L_038 NA | |
J3_7ASO_028 | 1/Y/728:734, 1/Y/818:822, 1/Y/832:839 | No text annotation | ||
J3_7ASO_010 | 1/Y/743:745, 1/Y/777:781, 1/Y/805:808 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
J3_7ASO_011 | 1/Y/1335:1340, 1/Y/1669:1671, 1/Y/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
J3_7ASO_012 | 1/Y/1343:1346, 1/Y/1649:1655, 1/Y/1664:1666 | No text annotation | homologous J3_7RQB_008 NA | |
J3_7ASO_038 | 1/Y/1381:1386, 1/Y/1419:1422, 1/Y/1439:1440 | No text annotation | homologous J3_5J7L_043 NA | |
J3_7ASO_032 | 1/Y/1466:1473, 1/Y/1611:1612, 1/Y/1615:1624 | No text annotation | ||
J3_7ASO_013 | 1/Y/1860:1863, 1/Y/1931:1960, 1/Y/1994:1999 | No text annotation | ||
J3_7ASO_014 | 1/Y/2118:2120, 1/Y/2223:2229, 1/Y/2248:2255 | No text annotation | ||
J3_7ASO_015 | 1/Y/2322:2324, 1/Y/2348:2350, 1/Y/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
J3_7ASO_039 | 1/Y/2357:2374, 1/Y/2397:2399, 1/Y/2408:2412 | No text annotation | ||
J3_7ASO_016 | 1/Y/2544:2547, 1/Y/2572:2574, 1/Y/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
J3_7ASO_017 | 1/Y/2834:2835, 1/Y/2851:2856, 1/Y/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
J4_7ASO_004 | 1/Y/271:272, 1/Y/416:421, 1/Y/445:452, 1/Y/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
J4_7ASO_012 | 1/Y/644:647, 1/Y/669:673, 1/Y/680:684, 1/Y/694:701 | No text annotation | homologous J4_4WF9_003 J4_69347.1 | |
J4_7ASO_006 | 1/Y/1308:1313, 1/Y/1331:1332, 1/Y/1689:1692, 1/Y/2036:2037 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
J4_7ASO_007 | 1/Y/1347:1351, 1/Y/1375:1380, 1/Y/1441:1442, 1/Y/1641:1648 | No text annotation | ||
J4_7ASO_013 | 1/Y/1799:1803, 1/Y/1815:1819, 1/Y/1854:1857, 1/Y/2002:2006 | No text annotation | homologous J4_5J7L_025 NA | |
J4_7ASO_009 | 1/Y/2309:2310, 1/Y/2352:2355, 1/Y/2414:2422, 1/Y/2448:2454 | No text annotation | ||
J4_7ASO_010 | 1/Y/2670:2673, 1/Y/2701:2703, 1/Y/2758:2762, 1/Y/2796:2798 | No text annotation | homologous J4_5J7L_028 NA | |
J5_7ASO_001 | 1/Y/47:54, 1/Y/115:120, 1/Y/129:130, 1/Y/149:151, 1/Y/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
J5_7ASO_002 | 1/Y/271:276, 1/Y/295:302, 1/Y/415:421, 1/Y/445:452, 1/Y/467:470 | No text annotation | ||
J5_7ASO_009 | 1/Y/576:578, 1/Y/603:609, 1/Y/618:622, 1/Y/1299:1300, 1/Y/2044:2045 | No text annotation | ||
J5_7ASO_004 | 1/Y/627:632, 1/Y/713:716, 1/Y/854:857, 1/Y/1234:1237, 1/Y/1285:1294 | No text annotation | ||
J5_7ASO_005 | 1/Y/1347:1351, 1/Y/1375:1387, 1/Y/1418:1423, 1/Y/1438:1442, 1/Y/1641:1648 | No text annotation | ||
J5_7ASO_006 | 1/Y/1718:1727, 1/Y/1749:1751, 1/Y/1778:1779, 1/Y/1783:1791, 1/Y/2015:2017 | No text annotation | ||
J5_7ASO_007 | 1/Y/2084:2091, 1/Y/2473:2481, 1/Y/2525:2534, 1/Y/2609:2615, 1/Y/2633:2638 | No text annotation | ||
J5_7ASO_008 | 1/Y/2101:2104, 1/Y/2270:2273, 1/Y/2285:2286, 1/Y/2308:2309, 1/Y/2454:2462 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
J6_7ASO_002 | 1/Y/45:47, 1/Y/180:186, 1/Y/217:228, 1/Y/233:238, 1/Y/265:269, 1/Y/472:479 | No text annotation | ||
J7_7ASO_004 | 1/Y/4:15, 1/Y/570:576, 1/Y/2045:2050, 1/Y/2067:2070, 1/Y/2652:2657, 1/Y/2815:2831, 1/Y/2909:2918 | No text annotation | ||
J7_7ASO_002 | 1/Y/862:867, 1/Y/880:881, 1/Y/987:990, 1/Y/1015:1020, 1/Y/1031:1040, 1/Y/1203:1209, 1/Y/1223:1229 | No text annotation | ||
J7_7ASO_003 | 1/Y/2101:2104, 1/Y/2270:2273, 1/Y/2285:2286, 1/Y/2308:2310, 1/Y/2352:2355, 1/Y/2414:2422, 1/Y/2448:2462 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7ASO_018 | No text annotation | ||
J3_7ASO_002 | No text annotation | ||
J3_7ASO_019 | No text annotation | ||
J3_7ASO_035 | No text annotation | ||
J3_7ASO_003 | No text annotation | ||
J3_7ASO_020 | No text annotation | ||
J3_7ASO_021 | No text annotation | ||
J3_7ASO_004 | No text annotation | ||
J3_7ASO_022 | No text annotation | ||
J3_7ASO_023 | No text annotation | ||
J3_7ASO_036 | No text annotation | ||
J3_7ASO_005 | No text annotation | ||
J3_7ASO_026 | No text annotation | ||
J3_7ASO_029 | No text annotation | ||
J3_7ASO_030 | No text annotation | ||
J3_7ASO_031 | No text annotation | ||
J3_7ASO_033 | No text annotation | ||
J4_7ASO_011 | No text annotation | ||
J4_7ASO_001 | No text annotation | ||
J4_7ASO_002 | No text annotation | ||
J4_7ASO_003 | No text annotation | ||
J4_7ASO_005 | No text annotation | ||
J4_7ASO_008 | No text annotation | ||
J5_7ASO_003 | No text annotation | ||
J6_7ASO_001 | No text annotation | ||
J7_7ASO_001 | No text annotation |
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