RNA 3D Hub //

7ASO Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ASO_0011/C/31:47No text annotation
HL_7ASO_0021/C/79:92No text annotation
HL_7ASO_0031/X/12:24No text annotation
HL_7ASO_0041/X/64:103No text annotation
HL_7ASO_0051/X/158:163No text annotation
HL_7ASO_0911/X/250:292No text annotation
HL_7ASO_0061/X/267:275GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_7ASO_0921/X/303:311No text annotation
HL_7ASO_0071/X/304:309GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_7ASO_0931/X/327:342No text annotation
HL_7ASO_0081/X/330:340No text annotation
HL_7ASO_0941/X/384:395No text annotation
HL_7ASO_0091/X/387:392GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_7ASO_0101/X/529:536No text annotation
homologous
HL_4LFB_013
NA
HL_7ASO_0111/X/624:632No text annotation
geometric
HL_5ID6_001
HL_69752.2
HL_7ASO_0121/X/690:718No text annotation
HL_7ASO_0131/X/794:804No text annotation
HL_7ASO_0141/X/847:857No text annotation
HL_7ASO_0951/X/872:877GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_7ASO_0961/X/907:912No text annotation
geometric
HL_8C3A_054
NA
HL_7ASO_0171/X/973:982No text annotation
HL_7ASO_0181/X/1008:1055No text annotation
HL_7ASO_0191/X/1088:1093No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7ASO_0201/X/1100:1109No text annotation
HL_7ASO_0211/X/1175:1183No text annotation
HL_7ASO_0221/X/1320:1339No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_7ASO_0231/X/1367:1377No text annotation
HL_7ASO_0241/X/1455:1470No text annotation
HL_7ASO_1091/X/1524:1535No text annotation
HL_7ASO_0251/X/1527:1532GNRA
homologous
HL_6CZR_103
NA
HL_7ASO_1101/Y/59:68Pseudoknot with intercalation
homologous
HL_4WF9_067
HL_93438.2
HL_7ASO_0261/Y/67:74No text annotation
homologous
HL_4WF9_001
HL_86769.4
HL_7ASO_0271/Y/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.2
HL_7ASO_0281/Y/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_7ASO_1111/Y/136:143GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_7ASO_0301/Y/152:177No text annotation
HL_7ASO_0311/Y/197:204No text annotation
geometric
HL_4V9F_006
HL_30068.2
HL_7ASO_0321/Y/228:233No text annotation
HL_7ASO_0331/Y/249:255No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_7ASO_1001/Y/276:295No text annotation
HL_7ASO_0341/Y/278:293No text annotation
geometric
HL_4V88_198
NA
HL_7ASO_0351/Y/348:355T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_01609.3
HL_7ASO_0361/Y/370:378T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_7ASO_0371/Y/427:439No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_7ASO_0381/Y/456:463Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.3
HL_7ASO_0391/Y/508:513GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_7ASO_0401/Y/533:538GNRA
homologous
HL_7RQB_016
NA
HL_7ASO_0411/Y/587:594No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_7ASO_0421/Y/609:618T-loop with 2 stacked bulged bases
homologous
HL_4WF9_018
HL_28252.8
HL_7ASO_0431/Y/654:662Other HL
homologous
HL_4WF9_019
HL_77436.5
HL_7ASO_0441/Y/674:679GNRA
homologous
HL_7RQB_020
NA
HL_7ASO_0451/Y/686:692No text annotation
HL_7ASO_0461/Y/747:775No text annotation
HL_7ASO_0471/Y/789:798No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_7ASO_1121/Y/824:830No text annotation
homologous
HL_4WF9_024
HL_87954.2
HL_7ASO_0491/Y/871:876No text annotation
homologous
HL_7RQB_025
NA
HL_7ASO_0501/Y/919:948No text annotation
HL_7ASO_1051/Y/999:1006GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_7ASO_0521/Y/1022:1029No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_7ASO_0531/Y/1083:1160No text annotation
HL_7ASO_0541/Y/1211:1221No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7ASO_0551/Y/1260:1265GNRA
homologous
HL_7A0S_031
HL_37824.7
HL_7ASO_0561/Y/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_28252.8
HL_7ASO_0571/Y/1361:1367Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.2
HL_7ASO_0581/Y/1400:1405GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_7ASO_0591/Y/1426:1435No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_7ASO_0601/Y/1511:1570No text annotation
HL_7ASO_0611/Y/1612:1615Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_7ASO_0621/Y/1656:1663No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_7ASO_0631/Y/1673:1681GNRA with extra cWW
homologous
HL_4WF9_039
HL_20167.2
HL_7ASO_0641/Y/1735:1740UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_7ASO_0651/Y/1756:1773No text annotation
HL_7ASO_0661/Y/1779:1783No text annotation
homologous
HL_7RQB_044
NA
HL_7ASO_0671/Y/1804:1814No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_7ASO_0681/Y/1833:1838GNRA
homologous
HL_7RQB_046
NA
HL_7ASO_0691/Y/1894:1901No text annotation
HL_7ASO_0701/Y/1976:1984No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_7ASO_0711/Y/2054:2063No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_7ASO_0721/Y/2134:2209No text annotation
HL_7ASO_0731/Y/2236:2242No text annotation
homologous
HL_4WF9_048
HL_49922.4
HL_7ASO_0741/Y/2275:2283No text annotation
homologous
HL_5J7L_186
HL_85367.2
HL_7ASO_0751/Y/2291:2303No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_7ASO_0771/Y/2350:2359tRNA anticodon loop
geometric
HL_8H1B_001
HL_10453.3
HL_7ASO_0781/Y/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_7ASO_0791/Y/2401:2406GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_7ASO_1071/Y/2425:2445No text annotation
HL_7ASO_0801/Y/2431:2440No text annotation
homologous
HL_4WF9_055
HL_53454.2
HL_7ASO_0811/Y/2497:2507No text annotation
HL_7ASO_1081/Y/2552:2565No text annotation
HL_7ASO_0821/Y/2554:2563No text annotation
HL_7ASO_0831/Y/2578:2584No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_7ASO_0841/Y/2621:2626GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_7ASO_0851/Y/2679:2695No text annotation
HL_7ASO_0861/Y/2727:2734No text annotation
geometric
HL_5TBW_012
NA
HL_7ASO_0871/Y/2772:2786No text annotation
HL_7ASO_0881/Y/2839:2847No text annotation
homologous
HL_4WF9_064
HL_64690.6
HL_7ASO_0891/Y/2876:2881GNRA
homologous
HL_7A0S_068
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_7ASO_090No text annotation
HL_7ASO_015No text annotation
HL_7ASO_016tRNA D-loop
HL_7ASO_097No text annotation
HL_7ASO_098No text annotation
HL_7ASO_099No text annotation
HL_7ASO_029No text annotation
HL_7ASO_101No text annotation
HL_7ASO_102No text annotation
HL_7ASO_103No text annotation
HL_7ASO_048No text annotation
HL_7ASO_104No text annotation
HL_7ASO_051tRNA anticodon loop
HL_7ASO_106No text annotation
HL_7ASO_076No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ASO_0011/C/3:5,
1/C/110:112		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_7ASO_1141/C/5:16,
1/C/63:110		No text annotation
IL_7ASO_1151/C/20:30,
1/C/48:59		No text annotation
IL_7ASO_0021/X/29:34,
1/X/559:564		No text annotation
IL_7ASO_0031/X/48:54,
1/X/366:369		No text annotation
IL_7ASO_1161/X/125:132,
1/X/239:243		No text annotation
IL_7ASO_0051/X/127:132,
1/X/239:241		No text annotation
IL_7ASO_0061/X/132:137,
1/X/234:239		No text annotation
IL_7ASO_0071/X/138:144,
1/X/178:233		No text annotation
IL_7ASO_1181/X/144:156,
1/X/165:178		No text annotation
IL_7ASO_0081/X/297:303,
1/X/311:319		No text annotation
IL_7ASO_0091/X/303:304,
1/X/309:311		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7ASO_0101/X/327:330,
1/X/340:342		Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_51387.2
IL_7ASO_0111/X/378:383,
1/X/397:399		No text annotation
IL_7ASO_1191/X/378:384,
1/X/395:399		No text annotation
IL_7ASO_0121/X/383:384,
1/X/395:397		No text annotation
IL_7ASO_0131/X/510:520,
1/X/547:552		No text annotation
IL_7ASO_1551/X/523:529,
1/X/536:544		Kink-turn related
homologous
IL_6CZR_133
NA
IL_7ASO_0151/X/599:607,
1/X/647:656		No text annotation
IL_7ASO_0161/X/607:610,
1/X/645:647		No text annotation
IL_7ASO_1211/X/610:623,
1/X/633:645		No text annotation
IL_7ASO_0171/X/662:667,
1/X/754:762		No text annotation
IL_7ASO_1221/X/667:674,
1/X/748:754		No text annotation
IL_7ASO_0181/X/669:674,
1/X/748:752		No text annotation
IL_7ASO_0191/X/679:681,
1/X/725:743		No text annotation
IL_7ASO_1231/X/679:690,
1/X/718:743		No text annotation
IL_7ASO_0201/X/681:690,
1/X/718:725		No text annotation
IL_7ASO_0211/X/787:791,
1/X/807:811		No text annotation
IL_7ASO_0221/X/897:906,
1/X/913:920		No text annotation
IL_7ASO_1241/X/1127:1175,
1/X/1183:1196		No text annotation
IL_7ASO_0231/X/1314:1320,
1/X/1339:1345		No text annotation
IL_7ASO_1251/X/1423:1440,
1/X/1483:1500		No text annotation
IL_7ASO_0241/X/1440:1442,
1/X/1482:1483		Major groove platform
geometric
IL_4WF9_078
IL_48076.6
IL_7ASO_0251/X/1442:1446,
1/X/1478:1482		UAA/GAN variation
homologous
IL_6CZR_170
NA
IL_7ASO_0261/X/1446:1448,
1/X/1476:1478		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_7ASO_0271/X/1449:1454,
1/X/1471:1475		No text annotation
IL_7ASO_0301/Y/24:30,
1/Y/555:561		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_04021.2
IL_7ASO_0311/Y/36:37,
1/Y/488:490		Single bulged A
homologous
IL_7A0S_002
IL_31462.6
IL_7ASO_0321/Y/42:44,
1/Y/480:483		Minor groove platform with extra cWW
homologous
IL_4WF9_003
IL_90351.1
IL_7ASO_0331/Y/80:85,
1/Y/97:105		No text annotation
geometric
IL_6CZR_143
NA
IL_7ASO_0341/Y/186:187,
1/Y/215:217		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_7ASO_0351/Y/190:197,
1/Y/204:212		9x8 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_008
IL_84694.2
IL_7ASO_0361/Y/241:248,
1/Y/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_04346.10
IL_7ASO_1561/Y/304:307,
1/Y/408:413		No text annotation
IL_7ASO_1291/Y/310:335,
1/Y/391:405		No text annotation
IL_7ASO_0381/Y/336:338,
1/Y/386:390		No text annotation
IL_7ASO_0391/Y/527:530,
1/Y/541:554		No text annotation
geometric
IL_4WF9_015
IL_81516.2
IL_7ASO_0401/Y/581:584,
1/Y/597:600		Double sheared
homologous
IL_4WF9_016
IL_09705.15
IL_7ASO_0411/Y/607:609,
1/Y/618:620		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_7ASO_0421/Y/638:640,
1/Y/705:707		Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_07785.1
IL_7ASO_0431/Y/649:653,
1/Y/663:667		AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_7ASO_0441/Y/717:719,
1/Y/851:853		No text annotation
geometric
IL_7RQB_017
NA
IL_7ASO_0451/Y/719:723,
1/Y/844:851		tHW-tHW cross-strand stack
homologous
IL_4WF9_021
IL_54041.2
IL_7ASO_0461/Y/742:743,
1/Y/808:810		Single bulged A
homologous
IL_5J7L_261
IL_31462.6
IL_7ASO_0471/Y/783:785,
1/Y/802:803		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_7ASO_0481/Y/820:822,
1/Y/832:836		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_7ASO_0491/Y/882:883,
1/Y/984:986		Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_7ASO_0501/Y/889:893,
1/Y/975:978		No text annotation
homologous
IL_4WF9_029
IL_06300.1
IL_7ASO_0511/Y/897:898,
1/Y/969:971		Single bulged U
homologous
IL_4WF9_030
IL_89505.4
IL_7ASO_0521/Y/901:907,
1/Y/960:966		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4WF9_031
IL_29198.2
IL_7ASO_0531/Y/907:908,
1/Y/958:960		Minor groove platform
geometric
IL_7RQB_028
NA
IL_7ASO_0541/Y/909:913,
1/Y/954:957		C-loop with bulged stacked A's
homologous
IL_4WF9_033
IL_26222.2
IL_7ASO_0551/Y/1038:1040,
1/Y/1203:1204		Single bulged C
homologous
IL_7RQB_035
NA
IL_7ASO_0561/Y/1042:1046,
1/Y/1197:1201		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_7ASO_1371/Y/1042:1055,
1/Y/1194:1201		No text annotation
IL_7ASO_0571/Y/1048:1055,
1/Y/1194:1195		SSU/LSU pseudoknot
geometric
IL_7A0S_034
IL_41203.4
IL_7ASO_0581/Y/1055:1057,
1/Y/1193:1194		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_7ASO_0591/Y/1062:1068,
1/Y/1184:1188		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_7ASO_1571/Y/1062:1074,
1/Y/1168:1188		No text annotation
IL_7ASO_0601/Y/1068:1074,
1/Y/1168:1184		No text annotation
geometric
IL_4WF9_040
IL_50715.3
IL_7ASO_0611/Y/1075:1078,
1/Y/1165:1167		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_7ASO_0621/Y/1081:1083,
1/Y/1160:1162		Isolated non-canonical cWW pair
homologous
IL_4WF9_042
IL_87907.2
IL_7ASO_0631/Y/1235:1237,
1/Y/1285:1288		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_7ASO_0641/Y/1243:1245,
1/Y/1277:1279		Isolated cWH basepair
homologous
IL_4WF9_045
IL_10167.6
IL_7ASO_0651/Y/1246:1253,
1/Y/1272:1276		Kink-turn
homologous
IL_7RQB_047
NA
IL_7ASO_0661/Y/1257:1259,
1/Y/1266:1268		Intercalated cWW
homologous
IL_4WF9_047
IL_31737.3
IL_7ASO_0671/Y/1300:1307,
1/Y/2038:2044		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_04346.10
IL_7ASO_0681/Y/1356:1360,
1/Y/1368:1370		No text annotation
IL_7ASO_0691/Y/1388:1392,
1/Y/1413:1417		UAA/GAN
homologous
IL_4WF9_051
IL_89021.2
IL_7ASO_0701/Y/1394:1398,
1/Y/1407:1411		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_7ASO_1401/Y/1446:1466,
1/Y/1624:1637		No text annotation
IL_7ASO_1411/Y/1477:1511,
1/Y/1570:1607		No text annotation
IL_7ASO_0711/Y/1695:1700,
1/Y/2031:2033		No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_7ASO_0721/Y/1707:1709,
1/Y/2022:2024		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_7ASO_0731/Y/1710:1713,
1/Y/2020:2021		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_50694.7
IL_7ASO_1431/Y/1710:1718,
1/Y/2017:2021		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_7ASO_0741/Y/1713:1718,
1/Y/2017:2020		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_7ASO_0751/Y/1730:1735,
1/Y/1740:1746		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_7ASO_0761/Y/1797:1798,
1/Y/2007:2009		Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_7ASO_0771/Y/1825:1831,
1/Y/1840:1848		Kink-turn related
homologous
IL_7RQB_070
NA
IL_7ASO_0781/Y/1864:1867,
1/Y/1929:1930		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_7ASO_0791/Y/1868:1869,
1/Y/1925:1928		Major groove intercalation
homologous
IL_4WF9_071
IL_82107.4
IL_7ASO_0801/Y/1873:1876,
1/Y/1920:1921		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_072
IL_68140.4
IL_7ASO_1581/Y/1878:1883,
1/Y/1913:1918		No text annotation
IL_7ASO_1461/Y/1883:1894,
1/Y/1901:1913		No text annotation
IL_7ASO_0821/Y/1960:1961,
1/Y/1991:1994		Bulged stacked bases
geometric
IL_4V9F_070
IL_22551.4
IL_7ASO_0831/Y/1961:1972,
1/Y/1988:1991		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_7ASO_0841/Y/2077:2079,
1/Y/2644:2645		Major groove platform
homologous
IL_7A0S_073
IL_48076.6
IL_7ASO_0851/Y/2081:2083,
1/Y/2639:2642		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7ASO_0861/Y/2094:2096,
1/Y/2469:2470		Single bulged U
homologous
IL_7RQB_080
NA
IL_7ASO_0871/Y/2097:2098,
1/Y/2465:2468		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7ASO_0881/Y/2108:2110,
1/Y/2263:2266		Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_85599.2
IL_7ASO_0891/Y/2111:2113,
1/Y/2260:2262		Isolated non-canonical cWW pair
homologous
IL_4WF9_083
IL_87907.2
IL_7ASO_1481/Y/2118:2120,
1/Y/2223:2255		No text annotation
IL_7ASO_1491/Y/2123:2125,
1/Y/2218:2220		Isolated non-canonical cWW pair
geometric
IL_4P3U_006
IL_28037.2
IL_7ASO_0921/Y/2229:2236,
1/Y/2242:2248		No text annotation
IL_7ASO_1501/Y/2310:2324,
1/Y/2348:2352		No text annotation
IL_7ASO_1591/Y/2324:2327,
1/Y/2343:2348		No text annotation
IL_7ASO_0941/Y/2377:2380,
1/Y/2391:2394		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_7ASO_0951/Y/2426:2431,
1/Y/2440:2444		No text annotation
IL_7ASO_0961/Y/2480:2481,
1/Y/2525:2527		Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_7ASO_0971/Y/2481:2482,
1/Y/2523:2525		Major groove platform
geometric
IL_4V9F_082
IL_48076.6
IL_7ASO_0981/Y/2484:2486,
1/Y/2520:2521		Major groove platform
homologous
IL_7A0S_085
IL_48076.6
IL_7ASO_0991/Y/2486:2488,
1/Y/2516:2520		Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_7ASO_1001/Y/2493:2497,
1/Y/2507:2511		Triple sheared
homologous
IL_4WF9_093
IL_17948.2
IL_7ASO_1511/Y/2534:2535,
1/Y/2607:2609		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_7ASO_1021/Y/2537:2539,
1/Y/2601:2605		Isolated non-canonical cWW with bulges
homologous
IL_4WF9_095
IL_07785.1
IL_7ASO_1601/Y/2537:2540,
1/Y/2598:2605		No text annotation
IL_7ASO_1031/Y/2539:2540,
1/Y/2598:2601		No text annotation
geometric
IL_4WF9_096
IL_42626.2
IL_7ASO_1611/Y/2549:2550,
1/Y/2567:2570		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_7ASO_1051/Y/2618:2619,
1/Y/2628:2630		Major groove platform
geometric
IL_4LFB_028
IL_48076.6
IL_7ASO_1061/Y/2663:2667,
1/Y/2801:2809		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_7ASO_1071/Y/2707:2711,
1/Y/2752:2754		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_7ASO_1081/Y/2714:2718,
1/Y/2745:2749		No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_7ASO_1091/Y/2722:2723,
1/Y/2738:2741		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_7ASO_1621/Y/2764:2769,
1/Y/2789:2794		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_7ASO_1111/Y/2858:2859,
1/Y/2898:2900		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_7ASO_1121/Y/2863:2865,
1/Y/2891:2894		No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_7ASO_1131/Y/2867:2872,
1/Y/2885:2889		tHS double platform
homologous
IL_4WF9_108
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_7ASO_004No text annotation
IL_7ASO_117No text annotation
IL_7ASO_120No text annotation
IL_7ASO_014No text annotation
IL_7ASO_028No text annotation
IL_7ASO_029Tandem non-canonical cWW pairs
IL_7ASO_126No text annotation
IL_7ASO_127No text annotation
IL_7ASO_037No text annotation
IL_7ASO_128No text annotation
IL_7ASO_130Triple sheared
IL_7ASO_131Partly complementary
IL_7ASO_132No text annotation
IL_7ASO_133Isolated non-canonical cWW pair
IL_7ASO_134No text annotation
IL_7ASO_135Isolated non-canonical cWW pair
IL_7ASO_136No text annotation
IL_7ASO_138Isolated non-canonical cWW pair
IL_7ASO_139No text annotation
IL_7ASO_142No text annotation
IL_7ASO_144Isolated non-canonical cWW pair
IL_7ASO_145No text annotation
IL_7ASO_081No text annotation
IL_7ASO_147Tandem non-canonical cWW pairs
IL_7ASO_090Tandem non-canonical cWW pairs
IL_7ASO_091No text annotation
IL_7ASO_093No text annotation
IL_7ASO_101Major groove platform with extra pair
IL_7ASO_152No text annotation
IL_7ASO_104No text annotation
IL_7ASO_153No text annotation
IL_7ASO_154No text annotation
IL_7ASO_110No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ASO_0011/X/37:41,
1/X/410:510,
1/X/552:556		No text annotation
J3_7ASO_0341/X/37:41,
1/X/410:519,
1/X/548:556		No text annotation
J3_7ASO_0021/X/45:48,
1/X/369:378,
1/X/399:406		No text annotation
J3_7ASO_0191/X/45:53,
1/X/367:378,
1/X/399:406		No text annotation
J3_7ASO_0351/X/833:837,
1/X/867:871,
1/X/878:885		No text annotation
J3_7ASO_0211/X/934:950,
1/X/1354:1366,
1/X/1378:1403		No text annotation
J3_7ASO_0041/X/1000:1008,
1/X/1055:1059,
1/X/1221:1226		No text annotation
J3_7ASO_0221/X/1060:1080,
1/X/1119:1127,
1/X/1196:1220		No text annotation
J3_7ASO_0361/X/1082:1087,
1/X/1094:1100,
1/X/1109:1117		No text annotation
J3_7ASO_0051/X/1084:1087,
1/X/1094:1100,
1/X/1109:1115		No text annotation
J3_7ASO_0061/Y/30:31,
1/Y/520:527,
1/Y/554:555		No text annotation
homologous
J3_7A0S_001
J3_60031.2
J3_7ASO_0241/Y/30:31,
1/Y/520:530,
1/Y/541:555		No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_7ASO_0251/Y/32:35,
1/Y/491:507,
1/Y/514:519		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_7ASO_0371/Y/56:57,
1/Y/70:76,
1/Y/109:113		No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_7ASO_0071/Y/56:67,
1/Y/74:76,
1/Y/109:113		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J3_7ASO_0081/Y/272:276,
1/Y/295:302,
1/Y/415:416		No text annotation
homologous
J3_7RQB_003
NA
J3_7ASO_0271/Y/338:344,
1/Y/359:368,
1/Y/380:386		No text annotation
J3_7ASO_0091/Y/728:734,
1/Y/818:820,
1/Y/836:839		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_7ASO_0281/Y/728:734,
1/Y/818:822,
1/Y/832:839		No text annotation
J3_7ASO_0101/Y/743:745,
1/Y/777:781,
1/Y/805:808		No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_7ASO_0111/Y/1335:1340,
1/Y/1669:1671,
1/Y/1683:1686		No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_7ASO_0121/Y/1343:1346,
1/Y/1649:1655,
1/Y/1664:1666		No text annotation
homologous
J3_7RQB_008
NA
J3_7ASO_0381/Y/1381:1386,
1/Y/1419:1422,
1/Y/1439:1440		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_7ASO_0321/Y/1466:1473,
1/Y/1611:1612,
1/Y/1615:1624		No text annotation
J3_7ASO_0131/Y/1860:1863,
1/Y/1931:1960,
1/Y/1994:1999		No text annotation
J3_7ASO_0141/Y/2118:2120,
1/Y/2223:2229,
1/Y/2248:2255		No text annotation
J3_7ASO_0151/Y/2322:2324,
1/Y/2348:2350,
1/Y/2359:2364		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_7ASO_0391/Y/2357:2374,
1/Y/2397:2399,
1/Y/2408:2412		No text annotation
J3_7ASO_0161/Y/2544:2547,
1/Y/2572:2574,
1/Y/2588:2594		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_7ASO_0171/Y/2834:2835,
1/Y/2851:2856,
1/Y/2902:2906		No text annotation
homologous
J3_4WF9_021
J3_76911.2
J4_7ASO_0111/X/55:63,
1/X/104:112,
1/X/322:324,
1/X/345:365		No text annotation
J4_7ASO_0021/X/114:124,
1/X/244:248,
1/X/294:297,
1/X/319:320		No text annotation
J4_7ASO_0031/X/950:1008,
1/X/1055:1059,
1/X/1221:1314,
1/X/1345:1354		No text annotation
J4_7ASO_0041/Y/271:272,
1/Y/416:421,
1/Y/445:452,
1/Y/467:470		No text annotation
homologous
J4_4WF9_001
J4_45801.6
J4_7ASO_0121/Y/644:647,
1/Y/669:673,
1/Y/680:684,
1/Y/694:701		No text annotation
homologous
J4_4WF9_003
J4_60168.1
J4_7ASO_0061/Y/1308:1313,
1/Y/1331:1332,
1/Y/1689:1692,
1/Y/2036:2037		No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_7ASO_0071/Y/1347:1351,
1/Y/1375:1380,
1/Y/1441:1442,
1/Y/1641:1648		No text annotation
J4_7ASO_0131/Y/1799:1803,
1/Y/1815:1819,
1/Y/1854:1857,
1/Y/2002:2006		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_7ASO_0091/Y/2309:2310,
1/Y/2352:2355,
1/Y/2414:2422,
1/Y/2448:2454		No text annotation
J4_7ASO_0101/Y/2670:2673,
1/Y/2701:2703,
1/Y/2758:2762,
1/Y/2796:2798		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_7ASO_0011/Y/47:54,
1/Y/115:120,
1/Y/129:130,
1/Y/149:151,
1/Y/178:180		No text annotation
homologous
J5_4WF9_001
J5_01737.2
J5_7ASO_0021/Y/271:276,
1/Y/295:302,
1/Y/415:421,
1/Y/445:452,
1/Y/467:470		No text annotation
J5_7ASO_0091/Y/576:578,
1/Y/603:609,
1/Y/618:622,
1/Y/1299:1300,
1/Y/2044:2045		No text annotation
J5_7ASO_0041/Y/627:632,
1/Y/713:716,
1/Y/854:857,
1/Y/1234:1237,
1/Y/1285:1294		No text annotation
J5_7ASO_0051/Y/1347:1351,
1/Y/1375:1387,
1/Y/1418:1423,
1/Y/1438:1442,
1/Y/1641:1648		No text annotation
J5_7ASO_0061/Y/1718:1727,
1/Y/1749:1751,
1/Y/1778:1779,
1/Y/1783:1791,
1/Y/2015:2017		No text annotation
J5_7ASO_0071/Y/2084:2091,
1/Y/2473:2481,
1/Y/2525:2534,
1/Y/2609:2615,
1/Y/2633:2638		No text annotation
J5_7ASO_0081/Y/2101:2104,
1/Y/2270:2273,
1/Y/2285:2286,
1/Y/2308:2309,
1/Y/2454:2462		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_7ASO_0021/Y/45:47,
1/Y/180:186,
1/Y/217:228,
1/Y/233:238,
1/Y/265:269,
1/Y/472:479		No text annotation
J7_7ASO_0041/Y/4:15,
1/Y/570:576,
1/Y/2045:2050,
1/Y/2067:2070,
1/Y/2652:2657,
1/Y/2815:2831,
1/Y/2909:2918		No text annotation
J7_7ASO_0021/Y/862:867,
1/Y/880:881,
1/Y/987:990,
1/Y/1015:1020,
1/Y/1031:1040,
1/Y/1203:1209,
1/Y/1223:1229		No text annotation
J7_7ASO_0031/Y/2101:2104,
1/Y/2270:2273,
1/Y/2285:2286,
1/Y/2308:2310,
1/Y/2352:2355,
1/Y/2414:2422,
1/Y/2448:2462		No text annotation

Problematic loops

#loop idProblemSequence
J3_7ASO_018No text annotation
J3_7ASO_003No text annotation
J3_7ASO_020No text annotation
J3_7ASO_023No text annotation
J3_7ASO_026No text annotation
J3_7ASO_029No text annotation
J3_7ASO_030No text annotation
J3_7ASO_031No text annotation
J3_7ASO_033No text annotation
J4_7ASO_001No text annotation
J4_7ASO_005No text annotation
J4_7ASO_008No text annotation
J5_7ASO_003No text annotation
J6_7ASO_001No text annotation
J7_7ASO_001No text annotation

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