HL_7ASO_039

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_039 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1325

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7ASO|1|Y|C|508
7ASO|1|Y|G|509
7ASO|1|Y|U|510
7ASO|1|Y|G|511
7ASO|1|Y|A|512
7ASO|1|Y|G|513

Current chains

Chain Y

23S

Nearby chains

Chain J

50S ribosomal protein L4

Chain i

50S ribosomal protein L34