HL_7ASO_043

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

7ASO|1|Y|A|658, 7ASO|1|Y|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_043 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.5504

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7ASO|1|Y|C|654
7ASO|1|Y|A|655
7ASO|1|Y|G|656
7ASO|1|Y|U|657
7ASO|1|Y|A|658
7ASO|1|Y|A|659
7ASO|1|Y|A|660
7ASO|1|Y|U|661
7ASO|1|Y|G|662

Current chains

Chain Y

23S

Nearby chains

Chain J

50S ribosomal protein L4