HL_7ASO_054

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUCCUUGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_054 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1926

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7ASO|1|Y|G|1211
7ASO|1|Y|U|1212
7ASO|1|Y|C|1213
7ASO|1|Y|C|1214
7ASO|1|Y|U|1215
7ASO|1|Y|U|1217
7ASO|1|Y|G|1218
7ASO|1|Y|G|1219
7ASO|1|Y|A|1220
7ASO|1|Y|C|1221

Current chains

Chain Y

23S

Nearby chains

Chain U

50S ribosomal protein L21