HL_7ASO_056

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_056 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1151

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

7ASO|1|Y|G|1318
7ASO|1|Y|U|1319
7ASO|1|Y|G|1320
7ASO|1|Y|A|1321
7ASO|1|Y|G|1322
7ASO|1|Y|A|1323
7ASO|1|Y|A|1324
7ASO|1|Y|U|1325
7ASO|1|Y|C|1326

Current chains

Chain Y

23S

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22