HL_7ASO_057

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7ASO|1|Y|C|1362, 7ASO|1|Y|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_057 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1386

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7ASO|1|Y|G|1361
7ASO|1|Y|C|1362
7ASO|1|Y|U|1363
7ASO|1|Y|C|1364
7ASO|1|Y|G|1365
7ASO|1|Y|U|1366
7ASO|1|Y|C|1367

Current chains

Chain Y

23S

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22