HL_7ASO_062

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7ASO|1|Y|A|1658, 7ASO|1|Y|A|1660, 7ASO|1|Y|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_062 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1402

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7ASO|1|Y|C|1656
7ASO|1|Y|G|1657
7ASO|1|Y|A|1658
7ASO|1|Y|C|1659
7ASO|1|Y|A|1660
7ASO|1|Y|C|1661
7ASO|1|Y|A|1662
7ASO|1|Y|G|1663

Current chains

Chain Y

23S

Nearby chains

Chain V

50S ribosomal protein L22

Chain i

50S ribosomal protein L34