HL_7ASO_077

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_077 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3181

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ASO|1|Y|G|2350
7ASO|1|Y|U|2351
7ASO|1|Y|G|2352
7ASO|1|Y|U|2353
7ASO|1|Y|A|2354
7ASO|1|Y|A|2355
7ASO|1|Y|A|2356
7ASO|1|Y|G|2357
7ASO|1|Y|G|2358
7ASO|1|Y|C|2359

Current chains

Chain Y

23S

Nearby chains

Chain P

50S ribosomal protein L16

Chain b

50S ribosomal protein L27