HL_7ASO_080

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7ASO|1|Y|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_080 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.2994

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ASO|1|Y|C|2431
7ASO|1|Y|G|2432
7ASO|1|Y|C|2433
7ASO|1|Y|A|2434
7ASO|1|Y|U|2435
7ASO|1|Y|G|2436
7ASO|1|Y|G|2437
7ASO|1|Y|A|2438
7ASO|1|Y|A|2439
7ASO|1|Y|G|2440

Current chains

Chain Y

23S

Nearby chains

Chain O

50S ribosomal protein L15