HL_7ASO_101

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGAAUAGG

Length

9 nucleotides

Bulged bases

7ASO|1|Y|G|687, 7ASO|1|Y|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASO_101 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.283

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ASO|1|Y|C|685
7ASO|1|Y|U|686
7ASO|1|Y|G|687
7ASO|1|Y|A|688
7ASO|1|Y|A|689
7ASO|1|Y|U|690
7ASO|1|Y|A|691
7ASO|1|Y|G|692
7ASO|1|Y|G|693

Current chains

Chain Y

23S

Nearby chains

Chain T

50S ribosomal protein L33

Chain j

50S ribosomal protein L35