HL_7ASP_005

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGAGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_005 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.266

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7ASP|1|X|C|303
7ASP|1|X|U|304
7ASP|1|X|G|305
7ASP|1|X|A|306
7ASP|1|X|G|307
7ASP|1|X|A|308
7ASP|1|X|G|309
7ASP|1|X|G|310

Current chains

Chain X

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S17

Chain l

30S ribosomal protein S4

Chain m

30S ribosomal protein S5