HL_7ASP_012

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7ASP|1|X|U|801

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_012 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3787

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ASP|1|X|G|794
7ASP|1|X|A|795
7ASP|1|X|U|796
7ASP|1|X|U|797
7ASP|1|X|A|798
7ASP|1|X|G|799
7ASP|1|X|A|800
7ASP|1|X|U|801
7ASP|1|X|A|802
7ASP|1|X|C|803
7ASP|1|X|C|804

Current chains

Chain X

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S7