HL_7ASP_029

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7ASP|1|Y|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_029 not in the Motif Atlas

Geometric match to HL_4V9F_006

Geometric discrepancy: 0.1439

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ASP|1|Y|G|197
7ASP|1|Y|A|198
7ASP|1|Y|A|199
7ASP|1|Y|A|200
7ASP|1|Y|C|201
7ASP|1|Y|A|202
7ASP|1|Y|U|203
7ASP|1|Y|C|204

Current chains

Chain Y

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28