HL_7ASP_032

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7ASP|1|Y|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_032 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.173

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

7ASP|1|Y|C|348
7ASP|1|Y|U|349
7ASP|1|Y|G|350
7ASP|1|Y|G|351
7ASP|1|Y|A|352
7ASP|1|Y|A|353
7ASP|1|Y|A|354
7ASP|1|Y|G|355

Current chains

Chain Y

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L24