HL_7ASP_033

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

7ASP|1|Y|A|372, 7ASP|1|Y|A|373, 7ASP|1|Y|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_033 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1626

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7ASP|1|Y|G|370
7ASP|1|Y|U|371
7ASP|1|Y|A|372
7ASP|1|Y|A|373
7ASP|1|Y|U|374
7ASP|1|Y|A|375
7ASP|1|Y|A|376
7ASP|1|Y|U|377
7ASP|1|Y|C|378

Current chains

Chain Y

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24