HL_7ASP_056

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7ASP|1|Y|U|1433, 7ASP|1|Y|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_056 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1824

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7ASP|1|Y|G|1426
7ASP|1|Y|U|1427
7ASP|1|Y|U|1428
7ASP|1|Y|G|1429
7ASP|1|Y|A|1430
7ASP|1|Y|U|1431
7ASP|1|Y|A|1432
7ASP|1|Y|U|1433
7ASP|1|Y|U|1434
7ASP|1|Y|C|1435

Current chains

Chain Y

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L23