HL_7ASP_076

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCGAAAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_076 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3663

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ASP|1|Y|U|2400
7ASP|1|Y|C|2401
7ASP|1|Y|G|2402
7ASP|1|Y|A|2403
7ASP|1|Y|A|2404
7ASP|1|Y|A|2405
7ASP|1|Y|G|2406
7ASP|1|Y|A|2407

Current chains

Chain Y

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L33,50S ribosomal protein L30

Chain M

50S ribosomal protein L18

Chain U

50S ribosomal protein L27