HL_7ASP_077

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7ASP|1|Y|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ASP_077 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2868

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ASP|1|Y|C|2431
7ASP|1|Y|G|2432
7ASP|1|Y|C|2433
7ASP|1|Y|A|2434
7ASP|1|Y|U|2435
7ASP|1|Y|G|2436
7ASP|1|Y|G|2437
7ASP|1|Y|A|2438
7ASP|1|Y|A|2439
7ASP|1|Y|G|2440

Current chains

Chain Y

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L15