HL_7ASP_087
3D structure
- PDB id
- 7ASP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 50 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 7ASP|1|3|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ASP_087 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1917
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ASP|1|3|U|32
7ASP|1|3|U|33
7ASP|1|3|C|34
7ASP|1|3|C|35
7ASP|1|3|C|36
7ASP|1|3|A|37
7ASP|1|3|U|38
7ASP|1|3|G|39
7ASP|1|3|C|40
7ASP|1|3|C|41
7ASP|1|3|G|42
7ASP|1|3|A|43
7ASP|1|3|A|44
7ASP|1|3|C|45
7ASP|1|3|A|46
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
- Chain Y
- Large subunit ribosomal RNA; LSU rRNA
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