HL_7AZO_001

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_001 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZO|1|16SA|U|658
7AZO|1|16SA|U|659
7AZO|1|16SA|U|660
7AZO|1|16SA|G|661
7AZO|1|16SA|A|662
7AZO|1|16SA|U|663
7AZO|1|16SA|C|664
7AZO|1|16SA|C|665
7AZO|1|16SA|U|666
7AZO|1|16SA|G|667
7AZO|1|16SA|G|668

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain MRNA

RNA (30-MER)

Chain S5A

30S ribosomal protein S5