7AZO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7AZO_001 | 1/16SA/658:668 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7AZO_002 | 1/16SA/724:730 | No text annotation | ||
| HL_7AZO_003 | 1/16SA/798:803 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_7AZO_004 | 1/16SA/832:837 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_7AZO_005 | 1/16SA/853:857 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_7AZO_006 | 1/16SA/900:908 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_7AZO_007 | 1/16SA/937:942 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_7AZO_008 | 1/16SA/961:974 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_7AZO_009 | 1/16SA/983:988 | UNCG | homologous HL_6CZR_080 NA | |
| HL_7AZO_010 | 1/16SA/1020:1025 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_7AZO_011 | 1/16SA/1060:1065 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_7AZO_012 | 1/16SA/1098:1104 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_7AZO_229 | 1/16SA/1151:1156 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_7AZO_014 | 1/16SA/1246:1252 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7AZO_015 | 1/16SA/1318:1327 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7AZO_016 | 1/16SA/1355:1360 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_7AZO_017 | 1/16SA/1415:1425 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_7AZO_018 | 1/16SA/1467:1471 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_7AZO_019 | 1/16SA/1485:1490 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_7AZO_020 | 1/16SA/1520:1525 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_7AZO_021 | 1/16SA/1586:1595 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7AZO_022 | 1/16SA/1636:1641 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_7AZO_230 | 1/16SA/1654:1659 | No text annotation | ||
| HL_7AZO_024 | 1/16SA/1704:1709 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_7AZO_025 | 1/16SA/1717:1724 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_7AZO_026 | 1/16SA/1762:1768 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_7AZO_027 | 1/16SA/1793:1798 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_7AZO_028 | 1/16SA/1892:1897 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_7AZO_029 | 1/16SA/1941:1950 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7AZO_030 | 1/16SA/1983:1994 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7AZO_031 | 1/16SA/2075:2080 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_7AZO_032 | 1/16SA/2138:2143 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_7AZO_033 | 1/16SB/658:668 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7AZO_035 | 1/16SB/798:803 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_7AZO_036 | 1/16SB/832:837 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_7AZO_232 | 1/16SB/853:857 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_7AZO_038 | 1/16SB/900:908 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_7AZO_039 | 1/16SB/937:942 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_7AZO_040 | 1/16SB/961:974 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_7AZO_041 | 1/16SB/983:988 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_7AZO_042 | 1/16SB/1020:1025 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_7AZO_043 | 1/16SB/1060:1065 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_7AZO_044 | 1/16SB/1097:1105 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_7AZO_233 | 1/16SB/1151:1156 | GNRA variation | homologous HL_4LFB_033 HL_37824.8 | |
| HL_7AZO_046 | 1/16SB/1246:1252 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7AZO_047 | 1/16SB/1318:1327 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7AZO_048 | 1/16SB/1355:1360 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_7AZO_049 | 1/16SB/1415:1425 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_7AZO_050 | 1/16SB/1467:1471 | No text annotation | geometric HL_8CRE_021 HL_70782.2 | |
| HL_7AZO_051 | 1/16SB/1485:1490 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_7AZO_052 | 1/16SB/1520:1525 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_7AZO_053 | 1/16SB/1586:1595 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7AZO_054 | 1/16SB/1636:1641 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_7AZO_055 | 1/16SB/1653:1660 | No text annotation | ||
| HL_7AZO_056 | 1/16SB/1704:1709 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_7AZO_057 | 1/16SB/1717:1724 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7AZO_058 | 1/16SB/1761:1769 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_7AZO_059 | 1/16SB/1793:1798 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_7AZO_060 | 1/16SB/1892:1897 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_7AZO_061 | 1/16SB/1941:1950 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7AZO_062 | 1/16SB/1983:1994 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7AZO_063 | 1/16SB/2075:2080 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_7AZO_064 | 1/16SB/2138:2143 | GNRA | homologous HL_6CZR_103 NA | |
| HL_7AZO_065 | 1/23SA/58:67 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_7AZO_066 | 1/23SA/86:94 | No text annotation | geometric HL_7RQB_002 NA | |
| HL_7AZO_067 | 1/23SA/121:126 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7AZO_068 | 1/23SA/136:141 | No text annotation | geometric HL_7RQB_004 NA | |
| HL_7AZO_234 | 1/23SA/155:161 | No text annotation | ||
| HL_7AZO_070 | 1/23SA/184:191 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_7AZO_071 | 1/23SA/215:220 | No text annotation | geometric HL_7A0S_007 HL_53890.2 | |
| HL_7AZO_072 | 1/23SA/236:242 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7AZO_073 | 1/23SA/270:276 | No text annotation | geometric HL_4WRT_001 NA | |
| HL_7AZO_074 | 1/23SA/330:337 | No text annotation | geometric HL_7RQB_010 NA | |
| HL_7AZO_075 | 1/23SA/344:348 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_7AZO_076 | 1/23SA/352:360 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_7AZO_077 | 1/23SA/410:420 | No text annotation | geometric HL_7RQB_013 NA | |
| HL_7AZO_078 | 1/23SA/438:445 | No text annotation | geometric HL_7RQB_014 NA | |
| HL_7AZO_079 | 1/23SA/490:495 | GNRA | geometric HL_5J7L_147 HL_37824.8 | |
| HL_7AZO_080 | 1/23SA/515:520 | GNRA | geometric HL_7RQB_016 NA | |
| HL_7AZO_081 | 1/23SA/570:575 | GNRA | geometric HL_3V7E_003 HL_37824.8 | |
| HL_7AZO_082 | 1/23SA/591:600 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_7AZO_083 | 1/23SA/637:643 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7AZO_084 | 1/23SA/656:661 | GNRA | geometric HL_7RQB_020 NA | |
| HL_7AZO_085 | 1/23SA/668:674 | GNRA | geometric HL_6VMY_001 HL_37824.8 | |
| HL_7AZO_087 | 1/23SA/761:768 | No text annotation | geometric HL_7RQB_022 NA | |
| HL_7AZO_088 | 1/23SA/793:802 | No text annotation | geometric HL_7RQB_023 NA | |
| HL_7AZO_089 | 1/23SA/828:834 | UNCG variation | geometric HL_7A0S_023 HL_53890.2 | |
| HL_7AZO_090 | 1/23SA/875:880 | No text annotation | geometric HL_5J7L_157 HL_55195.3 | |
| HL_7AZO_091 | 1/23SA/932:941 | No text annotation | ||
| HL_7AZO_092 | 1/23SA/1002:1009 | GNRA | geometric HL_7RQB_027 NA | |
| HL_7AZO_093 | 1/23SA/1026:1033 | No text annotation | geometric HL_7RQB_028 NA | |
| HL_7AZO_235 | 1/23SA/1220:1226 | No text annotation | ||
| HL_7AZO_097 | 1/23SA/1271:1276 | GNRA | geometric HL_4WFL_003 HL_37824.8 | |
| HL_7AZO_098 | 1/23SA/1330:1338 | No text annotation | geometric HL_7RQB_033 NA | |
| HL_7AZO_099 | 1/23SA/1373:1379 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_7AZO_100 | 1/23SA/1412:1417 | GNRA | geometric HL_7RQB_035 NA | |
| HL_7AZO_101 | 1/23SA/1438:1447 | No text annotation | geometric HL_7RQB_036 NA | |
| HL_7AZO_102 | 1/23SA/1502:1509 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_7AZO_103 | 1/23SA/1541:1547 | No text annotation | geometric HL_7RQB_038 NA | |
| HL_7AZO_104 | 1/23SA/1582:1587 | No text annotation | ||
| HL_7AZO_105 | 1/23SA/1615:1618 | Mini UNCG | geometric HL_7A0S_039 HL_48778.2 | |
| HL_7AZO_106 | 1/23SA/1661:1668 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_7AZO_107 | 1/23SA/1680:1685 | No text annotation | geometric HL_7RQB_041 NA | |
| HL_7AZO_108 | 1/23SA/1741:1746 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7AZO_109 | 1/23SA/1768:1774 | No text annotation | geometric HL_7RQB_043 NA | |
| HL_7AZO_110 | 1/23SA/1786:1790 | No text annotation | geometric HL_7RQB_044 NA | |
| HL_7AZO_111 | 1/23SA/1811:1821 | No text annotation | geometric HL_7RQB_045 NA | |
| HL_7AZO_112 | 1/23SA/1840:1845 | GNRA | geometric HL_5FJC_002 HL_37824.8 | |
| HL_7AZO_113 | 1/23SA/1898:1903 | GNRA | geometric HL_7RQB_047 NA | |
| HL_7AZO_236 | 1/23SA/1935:1945 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_7AZO_115 | 1/23SA/1974:1982 | No text annotation | geometric HL_7A0S_048 HL_20167.2 | |
| HL_7AZO_116 | 1/23SA/2052:2061 | No text annotation | geometric HL_7RQB_050 NA | |
| HL_7AZO_117 | 1/23SA/2168:2173 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7AZO_118 | 1/23SA/2229:2234 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_7AZO_119 | 1/23SA/2263:2271 | No text annotation | geometric HL_4V9F_055 HL_85367.2 | |
| HL_7AZO_120 | 1/23SA/2279:2291 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_7AZO_250 | 1/23SA/2319:2327 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_7AZO_122 | 1/23SA/2339:2346 | Pseudoknot geometry | geometric HL_7RQB_056 NA | |
| HL_7AZO_123 | 1/23SA/2370:2377 | No text annotation | geometric HL_7RQB_057 NA | |
| HL_7AZO_124 | 1/23SA/2389:2394 | GNRA | geometric HL_7RQB_058 NA | |
| HL_7AZO_125 | 1/23SA/2419:2428 | No text annotation | geometric HL_7RQB_059 NA | |
| HL_7AZO_126 | 1/23SA/2486:2494 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7AZO_127 | 1/23SA/2543:2550 | No text annotation | geometric HL_7RQB_061 NA | |
| HL_7AZO_128 | 1/23SA/2566:2572 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
| HL_7AZO_129 | 1/23SA/2609:2614 | GNRA | geometric HL_7RQB_063 NA | |
| HL_7AZO_130 | 1/23SA/2673:2678 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
| HL_7AZO_131 | 1/23SA/2716:2721 | No text annotation | geometric HL_7RQB_065 NA | |
| HL_7AZO_132 | 1/23SA/2761:2775 | No text annotation | geometric HL_7RQB_066 NA | |
| HL_7AZO_133 | 1/23SA/2809:2817 | UNCG variation | homologous HL_5J7L_200 HL_08100.1 | |
| HL_7AZO_134 | 1/23SA/2832:2840 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7AZO_135 | 1/23SA/2869:2874 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_7AZO_136 | 1/23SB/58:67 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_7AZO_137 | 1/23SB/86:94 | No text annotation | geometric HL_7RQB_002 NA | |
| HL_7AZO_138 | 1/23SB/121:126 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7AZO_139 | 1/23SB/136:141 | No text annotation | geometric HL_7RQB_004 NA | |
| HL_7AZO_141 | 1/23SB/184:191 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_7AZO_142 | 1/23SB/215:220 | No text annotation | geometric HL_7A0S_007 HL_53890.2 | |
| HL_7AZO_143 | 1/23SB/236:242 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7AZO_144 | 1/23SB/270:276 | No text annotation | ||
| HL_7AZO_145 | 1/23SB/330:337 | No text annotation | geometric HL_7RQB_010 NA | |
| HL_7AZO_146 | 1/23SB/344:348 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_7AZO_147 | 1/23SB/352:360 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_7AZO_237 | 1/23SB/411:419 | No text annotation | ||
| HL_7AZO_149 | 1/23SB/438:445 | No text annotation | geometric HL_7RQB_014 NA | |
| HL_7AZO_150 | 1/23SB/490:495 | GNRA | geometric HL_7A0S_015 HL_37824.8 | |
| HL_7AZO_151 | 1/23SB/515:520 | GNRA | geometric HL_4WF9_016 HL_37824.8 | |
| HL_7AZO_152 | 1/23SB/570:575 | GNRA | geometric HL_6CZR_078 NA | |
| HL_7AZO_153 | 1/23SB/591:600 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_7AZO_154 | 1/23SB/637:643 | No text annotation | geometric HL_7A0S_019 HL_47787.2 | |
| HL_7AZO_155 | 1/23SB/656:661 | GNRA | geometric HL_4WFL_003 HL_37824.8 | |
| HL_7AZO_156 | 1/23SB/668:674 | No text annotation | geometric HL_7RQB_021 NA | |
| HL_7AZO_157 | 1/23SB/761:768 | No text annotation | geometric HL_7RQB_022 NA | |
| HL_7AZO_158 | 1/23SB/793:802 | No text annotation | geometric HL_7RQB_023 NA | |
| HL_7AZO_159 | 1/23SB/828:834 | UNCG variation | geometric HL_7A0S_023 HL_53890.2 | |
| HL_7AZO_160 | 1/23SB/875:880 | No text annotation | geometric HL_5J7L_157 HL_55195.3 | |
| HL_7AZO_251 | 1/23SB/932:941 | No text annotation | ||
| HL_7AZO_162 | 1/23SB/1002:1009 | GNRA | geometric HL_7RQB_027 NA | |
| HL_7AZO_163 | 1/23SB/1026:1033 | No text annotation | geometric HL_4V9F_029 HL_42998.2 | |
| HL_7AZO_252 | 1/23SB/1220:1226 | No text annotation | ||
| HL_7AZO_165 | 1/23SB/1271:1276 | GNRA | geometric HL_7RQB_032 NA | |
| HL_7AZO_166 | 1/23SB/1330:1338 | No text annotation | geometric HL_7RQB_033 NA | |
| HL_7AZO_167 | 1/23SB/1373:1379 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_7AZO_168 | 1/23SB/1412:1417 | GNRA | geometric HL_7RQB_035 NA | |
| HL_7AZO_169 | 1/23SB/1438:1447 | No text annotation | geometric HL_7RQB_036 NA | |
| HL_7AZO_170 | 1/23SB/1502:1509 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_7AZO_171 | 1/23SB/1541:1547 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_7AZO_172 | 1/23SB/1582:1587 | No text annotation | ||
| HL_7AZO_173 | 1/23SB/1615:1618 | Mini UNCG | geometric HL_7A0S_039 HL_48778.2 | |
| HL_7AZO_174 | 1/23SB/1661:1668 | No text annotation | geometric HL_7A0S_040 HL_89567.2 | |
| HL_7AZO_175 | 1/23SB/1680:1685 | No text annotation | geometric HL_7RQB_041 NA | |
| HL_7AZO_176 | 1/23SB/1741:1746 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7AZO_177 | 1/23SB/1768:1774 | GNRA | homologous HL_8VTW_042 NA | |
| HL_7AZO_178 | 1/23SB/1786:1790 | No text annotation | geometric HL_7RQB_044 NA | |
| HL_7AZO_179 | 1/23SB/1811:1821 | No text annotation | geometric HL_7RQB_045 NA | |
| HL_7AZO_180 | 1/23SB/1840:1845 | GNRA | geometric HL_7RQB_046 NA | |
| HL_7AZO_181 | 1/23SB/1898:1903 | GNRA | geometric HL_5TBW_059 NA | |
| HL_7AZO_238 | 1/23SB/1935:1945 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_7AZO_183 | 1/23SB/1974:1982 | No text annotation | geometric HL_7RQB_049 NA | |
| HL_7AZO_184 | 1/23SB/2052:2061 | No text annotation | geometric HL_7RQB_050 NA | |
| HL_7AZO_185 | 1/23SB/2167:2174 | No text annotation | ||
| HL_7AZO_186 | 1/23SB/2229:2234 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_7AZO_187 | 1/23SB/2263:2271 | No text annotation | geometric HL_4V9F_055 HL_85367.2 | |
| HL_7AZO_188 | 1/23SB/2279:2291 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_7AZO_253 | 1/23SB/2319:2327 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_7AZO_190 | 1/23SB/2339:2346 | Pseudoknot geometry | geometric HL_7RQB_056 NA | |
| HL_7AZO_191 | 1/23SB/2370:2377 | No text annotation | geometric HL_7RQB_057 NA | |
| HL_7AZO_192 | 1/23SB/2389:2394 | GNRA | geometric HL_7RQB_058 NA | |
| HL_7AZO_193 | 1/23SB/2419:2428 | No text annotation | geometric HL_7RQB_059 NA | |
| HL_7AZO_194 | 1/23SB/2486:2494 | No text annotation | geometric HL_5J7L_193 HL_32735.2 | |
| HL_7AZO_195 | 1/23SB/2543:2550 | No text annotation | geometric HL_7RQB_061 NA | |
| HL_7AZO_196 | 1/23SB/2566:2572 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
| HL_7AZO_197 | 1/23SB/2609:2614 | GNRA | geometric HL_7RQB_063 NA | |
| HL_7AZO_198 | 1/23SB/2673:2678 | GNRA | geometric HL_5B2T_003 HL_37824.8 | |
| HL_7AZO_199 | 1/23SB/2716:2721 | No text annotation | geometric HL_7RQB_065 NA | |
| HL_7AZO_200 | 1/23SB/2761:2775 | No text annotation | geometric HL_7A0S_065 HL_74055.2 | |
| HL_7AZO_202 | 1/23SB/2832:2840 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7AZO_203 | 1/23SB/2869:2874 | GNRA | geometric HL_4V9F_065 HL_37824.8 | |
| HL_7AZO_239 | 1/5SA/36:50 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_7AZO_204 | 1/5SA/40:46 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_7AZO_205 | 1/5SA/88:93 | GNRA | homologous HL_4V9F_072 HL_37824.8 | |
| HL_7AZO_240 | 1/5SB/36:50 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_7AZO_206 | 1/5SB/40:46 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_7AZO_207 | 1/5SB/88:93 | No text annotation | ||
| HL_7AZO_208 | 1/ASIA/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_7AZO_241 | 1/ASIA/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_7AZO_210 | 1/ASIA/53:61 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7AZO_211 | 1/ASIB/12:24 | No text annotation | ||
| HL_7AZO_242 | 1/ASIB/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_7AZO_213 | 1/ASIB/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4P5J_003 HL_28252.9 | |
| HL_7AZO_214 | 1/ESIA/13:22 | No text annotation | geometric HL_6ORD_035 NA | |
| HL_7AZO_215 | 1/ESIA/30:40 | No text annotation | geometric HL_6GSK_218 HL_36684.4 | |
| HL_7AZO_243 | 1/ESIA/51:63 | No text annotation | homologous HL_5EL4_250 NA | |
| HL_7AZO_216 | 1/ESIA/53:61 | T-loop with 2 stacked bulged bases | geometric HL_3AMU_003 HL_28252.9 | |
| HL_7AZO_244 | 1/ESIB/12:23 | No text annotation | homologous HL_4WT8_234 NA | |
| HL_7AZO_218 | 1/ESIB/31:39 | tRNA anticodon loop | geometric HL_6UFG_007 HL_06059.7 | |
| HL_7AZO_219 | 1/ESIB/51:63 | No text annotation | homologous HL_5EL4_250 NA | |
| HL_7AZO_220 | 1/PSIA/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_7AZO_246 | 1/PSIA/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_7AZO_222 | 1/PSIA/53:61 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7AZO_223 | 1/PSIB/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_7AZO_247 | 1/PSIB/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_7AZO_225 | 1/PSIB/53:61 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7AZO_254 | 1/TRNA/11:24 | No text annotation | homologous HL_7KJT_001 HL_68572.1 | |
| HL_7AZO_226 | 1/TRNA/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_7AZO_228 | 1/TRNA/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7AZO_013 | No text annotation | ||
| HL_7AZO_023 | No text annotation | ||
| HL_7AZO_231 | No text annotation | ||
| HL_7AZO_034 | No text annotation | ||
| HL_7AZO_037 | No text annotation | ||
| HL_7AZO_045 | No text annotation | ||
| HL_7AZO_069 | No text annotation | ||
| HL_7AZO_086 | No text annotation | ||
| HL_7AZO_094 | No text annotation | ||
| HL_7AZO_095 | tRNA D-loop | ||
| HL_7AZO_096 | No text annotation | ||
| HL_7AZO_114 | No text annotation | ||
| HL_7AZO_121 | No text annotation | ||
| HL_7AZO_140 | No text annotation | ||
| HL_7AZO_148 | No text annotation | ||
| HL_7AZO_161 | No text annotation | ||
| HL_7AZO_164 | No text annotation | ||
| HL_7AZO_182 | No text annotation | ||
| HL_7AZO_189 | No text annotation | ||
| HL_7AZO_201 | No text annotation | ||
| HL_7AZO_209 | No text annotation | ||
| HL_7AZO_212 | No text annotation | ||
| HL_7AZO_217 | No text annotation | ||
| HL_7AZO_245 | No text annotation | ||
| HL_7AZO_221 | No text annotation | ||
| HL_7AZO_224 | No text annotation | ||
| HL_7AZO_248 | No text annotation | ||
| HL_7AZO_227 | No text annotation | ||
| HL_7AZO_249 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7AZO_001 | 1/16SA/676:678, 1/16SA/1181:1182 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_7AZO_002 | 1/16SA/690:691, 1/16SA/1037:1039 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_7AZO_003 | 1/16SA/693:698, 1/16SA/1000:1002 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_7AZO_004 | 1/16SA/700:702, 1/16SA/997:998 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_7AZO_005 | 1/16SA/709:712, 1/16SA/742:743 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_7AZO_006 | 1/16SA/713:715, 1/16SA/739:741 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_7AZO_343 | 1/16SA/713:717, 1/16SA/737:741 | No text annotation | ||
| IL_7AZO_007 | 1/16SA/768:771, 1/16SA/872:873 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_7AZO_008 | 1/16SA/772:776, 1/16SA/868:871 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7AZO_375 | 1/16SA/788:793, 1/16SA/808:814 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_7AZO_010 | 1/16SA/826:828, 1/16SA/841:843 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_7AZO_011 | 1/16SA/883:888, 1/16SA/918:925 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_7AZO_012 | 1/16SA/890:893, 1/16SA/915:916 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7AZO_013 | 1/16SA/933:934, 1/16SA/945:949 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_7AZO_014 | 1/16SA/1008:1010, 1/16SA/1033:1034 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_7AZO_015 | 1/16SA/1012:1016, 1/16SA/1030:1031 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_7AZO_016 | 1/16SA/1016:1017, 1/16SA/1028:1030 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_7AZO_017 | 1/16SA/1050:1057, 1/16SA/1068:1074 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_7AZO_018 | 1/16SA/1086:1090, 1/16SA/1113:1118 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_7AZO_019 | 1/16SA/1090:1095, 1/16SA/1107:1113 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_7AZO_020 | 1/16SA/1133:1140, 1/16SA/1169:1170 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_7AZO_021 | 1/16SA/1144:1150, 1/16SA/1157:1165 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_7AZO_022 | 1/16SA/1198:1204, 1/16SA/1503:1504 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_7AZO_023 | 1/16SA/1209:1213, 1/16SA/1386:1390 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_7AZO_024 | 1/16SA/1223:1225, 1/16SA/1273:1274 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_7AZO_025 | 1/16SA/1226:1227, 1/16SA/1269:1272 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_7AZO_026 | 1/16SA/1234:1241, 1/16SA/1257:1262 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_7AZO_027 | 1/16SA/1283:1284, 1/16SA/1380:1383 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_7AZO_028 | 1/16SA/1286:1287, 1/16SA/1376:1378 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_7AZO_029 | 1/16SA/1291:1295, 1/16SA/1369:1372 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_7AZO_345 | 1/16SA/1302:1306, 1/16SA/1342:1346 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_7AZO_031 | 1/16SA/1312:1317, 1/16SA/1328:1336 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_7AZO_032 | 1/16SA/1403:1407, 1/16SA/1433:1434 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_7AZO_033 | 1/16SA/1408:1412, 1/16SA/1428:1432 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_7AZO_034 | 1/16SA/1510:1517, 1/16SA/1528:1533 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_7AZO_035 | 1/16SA/1545:1546, 1/16SA/2021:2023 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_7AZO_036 | 1/16SA/1548:1550, 1/16SA/2018:2019 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_7AZO_037 | 1/16SA/1556:1558, 1/16SA/2008:2012 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_7AZO_038 | 1/16SA/1576:1577, 1/16SA/1853:1855 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_7AZO_346 | 1/16SA/1616:1620, 1/16SA/1672:1673 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_7AZO_040 | 1/16SA/1676:1678, 1/16SA/1835:1836 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_7AZO_042 | 1/16SA/1680:1684, 1/16SA/1831:1833 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7AZO_043 | 1/16SA/1685:1686, 1/16SA/1826:1830 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_7AZO_044 | 1/16SA/1688:1689, 1/16SA/1822:1824 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_7AZO_045 | 1/16SA/1689:1691, 1/16SA/1820:1822 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_7AZO_046 | 1/16SA/1752:1757, 1/16SA/1771:1777 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_7AZO_047 | 1/16SA/1757:1760, 1/16SA/1770:1771 | Minor groove platform | geometric IL_5J7L_052 IL_15052.4 | |
| IL_7AZO_347 | 1/16SA/1786:1789, 1/16SA/1802:1808 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
| IL_7AZO_048 | 1/16SA/1874:1880, 1/16SA/1911:1917 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_7AZO_049 | 1/16SA/1882:1885, 1/16SA/1904:1909 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_7AZO_050 | 1/16SA/1886:1887, 1/16SA/1901:1903 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_7AZO_051 | 1/16SA/1887:1889, 1/16SA/1900:1901 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_7AZO_052 | 1/16SA/1930:1935, 1/16SA/1956:1961 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_7AZO_053 | 1/16SA/2027:2029, 1/16SA/2124:2127 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7AZO_348 | 1/16SA/2029:2032, 1/16SA/2120:2124 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_7AZO_349 | 1/16SA/2033:2035, 1/16SA/2117:2119 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_7AZO_350 | 1/16SA/2035:2037, 1/16SA/2114:2117 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_7AZO_056 | 1/16SA/2040:2042, 1/16SA/2109:2111 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_7AZO_057 | 1/16SA/2044:2047, 1/16SA/2104:2107 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_7AZO_058 | 1/16SA/2059:2063, 1/16SA/2089:2092 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_7AZO_059 | 1/16SA/2063:2065, 1/16SA/2087:2089 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_7AZO_060 | 1/16SA/2068:2073, 1/16SA/2082:2084 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_7AZO_351 | 1/16SA/2154:2160, 1/MRNA/35:41 | No text annotation | ||
| IL_7AZO_061 | 1/16SB/676:678, 1/16SB/1181:1182 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_7AZO_062 | 1/16SB/690:691, 1/16SB/1037:1039 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_7AZO_063 | 1/16SB/693:698, 1/16SB/1000:1002 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_7AZO_064 | 1/16SB/700:702, 1/16SB/997:998 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_7AZO_065 | 1/16SB/709:712, 1/16SB/742:743 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_7AZO_066 | 1/16SB/713:715, 1/16SB/739:741 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_7AZO_067 | 1/16SB/768:771, 1/16SB/872:873 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_7AZO_068 | 1/16SB/772:776, 1/16SB/868:871 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7AZO_069 | 1/16SB/788:793, 1/16SB/808:814 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_7AZO_070 | 1/16SB/826:828, 1/16SB/841:843 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_7AZO_071 | 1/16SB/883:888, 1/16SB/918:925 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_7AZO_072 | 1/16SB/890:893, 1/16SB/915:916 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_7AZO_073 | 1/16SB/933:934, 1/16SB/945:949 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_7AZO_074 | 1/16SB/1008:1010, 1/16SB/1033:1034 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_7AZO_075 | 1/16SB/1012:1016, 1/16SB/1030:1031 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7AZO_076 | 1/16SB/1016:1017, 1/16SB/1028:1030 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_7AZO_077 | 1/16SB/1050:1057, 1/16SB/1068:1074 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_7AZO_078 | 1/16SB/1086:1090, 1/16SB/1113:1118 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_7AZO_079 | 1/16SB/1090:1095, 1/16SB/1107:1113 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_7AZO_080 | 1/16SB/1133:1140, 1/16SB/1169:1170 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_7AZO_081 | 1/16SB/1144:1150, 1/16SB/1157:1165 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7AZO_082 | 1/16SB/1198:1204, 1/16SB/1503:1504 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_7AZO_083 | 1/16SB/1209:1213, 1/16SB/1386:1390 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_7AZO_084 | 1/16SB/1223:1225, 1/16SB/1273:1274 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_7AZO_085 | 1/16SB/1226:1227, 1/16SB/1269:1272 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_7AZO_086 | 1/16SB/1234:1241, 1/16SB/1257:1262 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_7AZO_087 | 1/16SB/1283:1284, 1/16SB/1380:1383 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_7AZO_088 | 1/16SB/1286:1287, 1/16SB/1376:1378 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_7AZO_089 | 1/16SB/1291:1295, 1/16SB/1369:1372 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_7AZO_353 | 1/16SB/1302:1306, 1/16SB/1342:1346 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7AZO_091 | 1/16SB/1312:1317, 1/16SB/1328:1336 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_7AZO_092 | 1/16SB/1403:1407, 1/16SB/1433:1434 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_7AZO_093 | 1/16SB/1408:1412, 1/16SB/1428:1432 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_7AZO_094 | 1/16SB/1510:1517, 1/16SB/1528:1533 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_7AZO_095 | 1/16SB/1545:1546, 1/16SB/2021:2023 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_7AZO_096 | 1/16SB/1548:1550, 1/16SB/2018:2019 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_7AZO_097 | 1/16SB/1556:1558, 1/16SB/2008:2012 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7AZO_098 | 1/16SB/1576:1577, 1/16SB/1853:1855 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_7AZO_099 | 1/16SB/1616:1620, 1/16SB/1672:1673 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_7AZO_100 | 1/16SB/1625:1626, 1/16SB/1665:1667 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7AZO_101 | 1/16SB/1676:1678, 1/16SB/1835:1836 | Single bulged U | geometric IL_4LFB_042 IL_89505.4 | |
| IL_7AZO_103 | 1/16SB/1680:1684, 1/16SB/1831:1833 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7AZO_104 | 1/16SB/1685:1686, 1/16SB/1826:1830 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7AZO_105 | 1/16SB/1688:1689, 1/16SB/1822:1824 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_7AZO_106 | 1/16SB/1689:1691, 1/16SB/1820:1822 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_7AZO_107 | 1/16SB/1752:1757, 1/16SB/1771:1777 | No text annotation | geometric IL_4LFB_048 IL_85222.1 | |
| IL_7AZO_108 | 1/16SB/1757:1760, 1/16SB/1770:1771 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7AZO_109 | 1/16SB/1874:1880, 1/16SB/1911:1917 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_7AZO_110 | 1/16SB/1882:1885, 1/16SB/1904:1909 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_7AZO_111 | 1/16SB/1886:1889, 1/16SB/1900:1903 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_7AZO_112 | 1/16SB/1930:1935, 1/16SB/1956:1961 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_7AZO_113 | 1/16SB/2027:2029, 1/16SB/2124:2127 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7AZO_355 | 1/16SB/2029:2032, 1/16SB/2120:2124 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_7AZO_356 | 1/16SB/2033:2035, 1/16SB/2117:2119 | Isolated non-canonical cWW pair | homologous IL_4LFB_069 IL_87907.2 | |
| IL_7AZO_357 | 1/16SB/2035:2037, 1/16SB/2114:2117 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_7AZO_116 | 1/16SB/2040:2042, 1/16SB/2109:2111 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_7AZO_117 | 1/16SB/2044:2047, 1/16SB/2104:2107 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_7AZO_118 | 1/16SB/2059:2063, 1/16SB/2089:2092 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_7AZO_119 | 1/16SB/2063:2065, 1/16SB/2087:2089 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_7AZO_120 | 1/16SB/2068:2073, 1/16SB/2082:2084 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_7AZO_121 | 1/16SB/2154:2157, 1/MRNB/38:41 | Tandem non-canonical cWW pairs | geometric IL_280D_001 IL_77658.1 | |
| IL_7AZO_122 | 1/23SA/24:30, 1/23SA/537:543 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_7AZO_123 | 1/23SA/36:37, 1/23SA/470:472 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7AZO_376 | 1/23SA/42:43, 1/23SA/463:465 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_7AZO_125 | 1/23SA/80:84, 1/23SA/96:103 | Kink-turn | geometric IL_7RQB_004 NA | |
| IL_7AZO_126 | 1/23SA/173:174, 1/23SA/202:204 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_7AZO_127 | 1/23SA/178:184, 1/23SA/191:198 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_7AZO_128 | 1/23SA/229:235, 1/23SA/243:248 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_7RQB_007 NA | |
| IL_7AZO_129 | 1/23SA/292:293, 1/23SA/393:395 | Major groove platform | geometric IL_7RQB_009 NA | |
| IL_7AZO_131 | 1/23SA/305:309, 1/23SA/382:385 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_7AZO_132 | 1/23SA/313:315, 1/23SA/375:378 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_7AZO_133 | 1/23SA/318:320, 1/23SA/368:372 | No text annotation | geometric IL_7RQB_013 NA | |
| IL_7AZO_134 | 1/23SA/509:512, 1/23SA/523:536 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_7AZO_135 | 1/23SA/589:591, 1/23SA/600:602 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_7AZO_136 | 1/23SA/631:635, 1/23SA/645:649 | AAA cross-strand stack | geometric IL_4WF9_019 IL_66798.2 | |
| IL_7AZO_137 | 1/23SA/721:723, 1/23SA/855:857 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7AZO_138 | 1/23SA/723:727, 1/23SA/848:855 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_7AZO_139 | 1/23SA/746:747, 1/23SA/812:814 | Single bulged A | geometric IL_7A0S_016 IL_31462.7 | |
| IL_7AZO_140 | 1/23SA/751:752, 1/23SA/777:779 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_7AZO_141 | 1/23SA/752:756, 1/23SA/773:777 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_7AZO_142 | 1/23SA/787:790, 1/23SA/805:807 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
| IL_7AZO_143 | 1/23SA/824:826, 1/23SA/836:840 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_7AZO_144 | 1/23SA/886:887, 1/23SA/987:989 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_7AZO_145 | 1/23SA/893:895, 1/23SA/978:981 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_7AZO_146 | 1/23SA/895:899, 1/23SA/975:978 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_7AZO_147 | 1/23SA/907:911, 1/23SA/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_7AZO_148 | 1/23SA/911:912, 1/23SA/961:963 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_7AZO_149 | 1/23SA/913:917, 1/23SA/957:960 | C-loop | geometric IL_7RQB_029 NA | |
| IL_7AZO_358 | 1/23SA/919:921, 1/23SA/953:955 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_7AZO_150 | 1/23SA/924:928, 1/23SA/946:950 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 IL_17948.2 | |
| IL_7AZO_151 | 1/23SA/928:932, 1/23SA/941:946 | No text annotation | ||
| IL_7AZO_152 | 1/23SA/999:1001, 1/23SA/1010:1012 | No text annotation | geometric IL_7RQB_034 NA | |
| IL_7AZO_153 | 1/23SA/1042:1044, 1/23SA/1208:1209 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7AZO_154 | 1/23SA/1046:1050, 1/23SA/1202:1206 | UAA/GAN | geometric IL_7RQB_036 NA | |
| IL_7AZO_155 | 1/23SA/1052:1059, 1/23SA/1199:1200 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7AZO_156 | 1/23SA/1059:1061, 1/23SA/1198:1199 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_7AZO_157 | 1/23SA/1066:1072, 1/23SA/1188:1193 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_7AZO_158 | 1/23SA/1072:1078, 1/23SA/1172:1188 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_7AZO_159 | 1/23SA/1079:1082, 1/23SA/1169:1171 | Isolated non-canonical cWW pair | geometric IL_7RQB_041 NA | |
| IL_7AZO_160 | 1/23SA/1091:1099, 1/23SA/1156:1160 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
| IL_7AZO_161 | 1/23SA/1135:1139, 1/23SA/1148:1150 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_7AZO_162 | 1/23SA/1244:1246, 1/23SA/1296:1299 | Isolated cWS basepair | geometric IL_7RQB_045 NA | |
| IL_7AZO_163 | 1/23SA/1250:1254, 1/23SA/1289:1292 | No text annotation | geometric IL_7RQB_046 NA | |
| IL_7AZO_164 | 1/23SA/1256:1263, 1/23SA/1283:1287 | Kink-turn | geometric IL_7RQB_047 NA | |
| IL_7AZO_165 | 1/23SA/1267:1269, 1/23SA/1278:1279 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_7AZO_166 | 1/23SA/1311:1318, 1/23SA/2036:2042 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_049 NA | |
| IL_7AZO_167 | 1/23SA/1359:1362, 1/23SA/1652:1653 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_7AZO_168 | 1/23SA/1368:1372, 1/23SA/1380:1382 | C-loop | geometric IL_7RQB_051 NA | |
| IL_7AZO_169 | 1/23SA/1400:1404, 1/23SA/1425:1429 | UAA/GAN | geometric IL_7RQB_052 NA | |
| IL_7AZO_170 | 1/23SA/1406:1410, 1/23SA/1419:1423 | tSH-tHW-tHS | geometric IL_7RQB_053 NA | |
| IL_7AZO_171 | 1/23SA/1464:1465, 1/23SA/1632:1636 | No text annotation | geometric IL_7RQB_054 NA | |
| IL_7AZO_172 | 1/23SA/1466:1470, 1/23SA/1627:1631 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_7AZO_173 | 1/23SA/1482:1484, 1/23SA/1607:1610 | No text annotation | geometric IL_7A0S_052 IL_14688.1 | |
| IL_7AZO_174 | 1/23SA/1486:1489, 1/23SA/1601:1605 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_7AZO_175 | 1/23SA/1498:1500, 1/23SA/1512:1513 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7AZO_176 | 1/23SA/1501:1502, 1/23SA/1509:1511 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_7AZO_177 | 1/23SA/1519:1523, 1/23SA/1569:1572 | UAA/GAN variation | geometric IL_7RQB_060 NA | |
| IL_7AZO_178 | 1/23SA/1531:1532, 1/23SA/1555:1561 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_7AZO_179 | 1/23SA/1538:1540, 1/23SA/1548:1549 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_7AZO_180 | 1/23SA/1575:1579, 1/23SA/1590:1596 | No text annotation | geometric IL_7RQB_063 NA | |
| IL_7AZO_181 | 1/23SA/1701:1706, 1/23SA/2029:2031 | No text annotation | geometric IL_7RQB_064 NA | |
| IL_7AZO_182 | 1/23SA/1713:1715, 1/23SA/2020:2022 | Isolated tWW turn | geometric IL_7A0S_060 IL_67095.2 | |
| IL_7AZO_183 | 1/23SA/1716:1719, 1/23SA/2018:2019 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7AZO_360 | 1/23SA/1716:1724, 1/23SA/2015:2019 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_7AZO_184 | 1/23SA/1719:1724, 1/23SA/2015:2018 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_7AZO_185 | 1/23SA/1736:1741, 1/23SA/1746:1752 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_7AZO_186 | 1/23SA/1804:1805, 1/23SA/2005:2007 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_7AZO_187 | 1/23SA/1832:1838, 1/23SA/1847:1855 | Kink-turn related | geometric IL_7RQB_070 NA | |
| IL_7AZO_188 | 1/23SA/1871:1874, 1/23SA/1927:1928 | Minor groove platform, major groove intercalation | geometric IL_7RQB_071 NA | |
| IL_7AZO_189 | 1/23SA/1875:1876, 1/23SA/1923:1926 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
| IL_7AZO_190 | 1/23SA/1880:1883, 1/23SA/1918:1919 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7AZO_191 | 1/23SA/1885:1889, 1/23SA/1912:1916 | UAA/GAN with extra stack | geometric IL_7RQB_074 NA | |
| IL_7AZO_192 | 1/23SA/1890:1894, 1/23SA/1907:1911 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7AZO_193 | 1/23SA/1958:1959, 1/23SA/1989:1992 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_7AZO_194 | 1/23SA/1959:1970, 1/23SA/1986:1989 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_7AZO_195 | 1/23SA/2075:2077, 1/23SA/2632:2633 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_7AZO_196 | 1/23SA/2079:2082, 1/23SA/2626:2630 | No text annotation | geometric IL_7RQB_079 NA | |
| IL_7AZO_197 | 1/23SA/2092:2094, 1/23SA/2457:2458 | Single bulged U | geometric IL_7A0S_075 IL_89505.4 | |
| IL_7AZO_198 | 1/23SA/2095:2096, 1/23SA/2453:2456 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7AZO_199 | 1/23SA/2106:2108, 1/23SA/2251:2254 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_7AZO_200 | 1/23SA/2110:2112, 1/23SA/2247:2249 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_7AZO_201 | 1/23SA/2133:2135, 1/23SA/2204:2206 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_28037.2 | |
| IL_7AZO_202 | 1/23SA/2135:2145, 1/23SA/2203:2204 | No text annotation | ||
| IL_7AZO_203 | 1/23SA/2149:2152, 1/23SA/2186:2199 | No text annotation | ||
| IL_7AZO_361 | 1/23SA/2149:2164, 1/23SA/2177:2199 | No text annotation | ||
| IL_7AZO_205 | 1/23SA/2312:2314, 1/23SA/2332:2336 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_7AZO_206 | 1/23SA/2365:2368, 1/23SA/2379:2382 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_7AZO_362 | 1/23SA/2416:2418, 1/23SA/2429:2430 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
| IL_7AZO_208 | 1/23SA/2468:2469, 1/23SA/2513:2515 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_7AZO_209 | 1/23SA/2469:2470, 1/23SA/2511:2513 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7AZO_210 | 1/23SA/2472:2474, 1/23SA/2508:2509 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_7AZO_211 | 1/23SA/2474:2476, 1/23SA/2504:2508 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_7AZO_212 | 1/23SA/2481:2485, 1/23SA/2495:2499 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 IL_17948.2 | |
| IL_7AZO_213 | 1/23SA/2522:2523, 1/23SA/2595:2597 | Major groove platform | geometric IL_7A0S_088 IL_07039.3 | |
| IL_7AZO_214 | 1/23SA/2525:2527, 1/23SA/2589:2593 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_7AZO_215 | 1/23SA/2527:2528, 1/23SA/2586:2589 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_7AZO_216 | 1/23SA/2537:2538, 1/23SA/2555:2558 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_7AZO_218 | 1/23SA/2606:2607, 1/23SA/2616:2618 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7AZO_219 | 1/23SA/2651:2655, 1/23SA/2790:2798 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_7AZO_220 | 1/23SA/2667:2673, 1/23SA/2678:2683 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_7AZO_221 | 1/23SA/2695:2699, 1/23SA/2741:2743 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7AZO_222 | 1/23SA/2702:2706, 1/23SA/2734:2738 | No text annotation | geometric IL_7RQB_105 NA | |
| IL_7AZO_223 | 1/23SA/2710:2711, 1/23SA/2726:2730 | Multiple bulged bases | geometric IL_7RQB_106 NA | |
| IL_7AZO_224 | 1/23SA/2753:2758, 1/23SA/2778:2783 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_7AZO_225 | 1/23SA/2851:2852, 1/23SA/2891:2893 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_7AZO_226 | 1/23SA/2856:2859, 1/23SA/2883:2887 | No text annotation | geometric IL_7RQB_109 NA | |
| IL_7AZO_227 | 1/23SA/2860:2865, 1/23SA/2878:2882 | tHS double platform | geometric IL_7RQB_110 NA | |
| IL_7AZO_228 | 1/23SB/24:30, 1/23SB/537:543 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_7AZO_229 | 1/23SB/36:37, 1/23SB/470:472 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7AZO_377 | 1/23SB/42:43, 1/23SB/463:465 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_7AZO_231 | 1/23SB/80:84, 1/23SB/96:103 | Kink-turn | geometric IL_7RQB_004 NA | |
| IL_7AZO_232 | 1/23SB/173:174, 1/23SB/202:204 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_7AZO_233 | 1/23SB/178:184, 1/23SB/191:198 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_7AZO_234 | 1/23SB/229:235, 1/23SB/243:248 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_7RQB_007 NA | |
| IL_7AZO_235 | 1/23SB/292:293, 1/23SB/393:395 | Major groove platform | geometric IL_1XJR_002 IL_48076.6 | |
| IL_7AZO_236 | 1/23SB/298:304, 1/23SB/386:388 | No text annotation | ||
| IL_7AZO_237 | 1/23SB/305:309, 1/23SB/382:385 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_7AZO_238 | 1/23SB/313:315, 1/23SB/375:378 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_7AZO_239 | 1/23SB/318:320, 1/23SB/368:372 | No text annotation | geometric IL_7RQB_013 NA | |
| IL_7AZO_240 | 1/23SB/509:512, 1/23SB/523:536 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_7AZO_241 | 1/23SB/589:591, 1/23SB/600:602 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_7AZO_242 | 1/23SB/631:635, 1/23SB/645:649 | AAA cross-strand stack | geometric IL_4WF9_019 IL_66798.2 | |
| IL_7AZO_243 | 1/23SB/721:723, 1/23SB/855:857 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7AZO_244 | 1/23SB/723:727, 1/23SB/848:855 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_7AZO_245 | 1/23SB/746:747, 1/23SB/812:814 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_7AZO_246 | 1/23SB/751:752, 1/23SB/777:779 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_7AZO_247 | 1/23SB/752:756, 1/23SB/773:777 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_7AZO_248 | 1/23SB/787:790, 1/23SB/805:807 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
| IL_7AZO_249 | 1/23SB/824:826, 1/23SB/836:840 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_7AZO_250 | 1/23SB/886:887, 1/23SB/987:989 | Single stack bend | geometric IL_7A0S_022 IL_90729.1 | |
| IL_7AZO_251 | 1/23SB/893:895, 1/23SB/978:981 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_7AZO_363 | 1/23SB/893:899, 1/23SB/975:981 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_7AZO_252 | 1/23SB/895:899, 1/23SB/975:978 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_7AZO_253 | 1/23SB/907:911, 1/23SB/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_7AZO_254 | 1/23SB/911:912, 1/23SB/961:963 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_7AZO_255 | 1/23SB/913:917, 1/23SB/957:960 | C-loop | geometric IL_7RQB_029 NA | |
| IL_7AZO_256 | 1/23SB/924:928, 1/23SB/946:950 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 IL_17948.2 | |
| IL_7AZO_378 | 1/23SB/924:930, 1/23SB/943:950 | No text annotation | ||
| IL_7AZO_257 | 1/23SB/928:931, 1/23SB/942:946 | No text annotation | ||
| IL_7AZO_258 | 1/23SB/999:1001, 1/23SB/1010:1012 | No text annotation | geometric IL_7RQB_034 NA | |
| IL_7AZO_259 | 1/23SB/1042:1044, 1/23SB/1208:1209 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7AZO_260 | 1/23SB/1046:1050, 1/23SB/1202:1206 | UAA/GAN | geometric IL_4WF9_036 IL_38507.2 | |
| IL_7AZO_261 | 1/23SB/1052:1061, 1/23SB/1198:1200 | No text annotation | ||
| IL_7AZO_262 | 1/23SB/1066:1072, 1/23SB/1188:1193 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_7AZO_263 | 1/23SB/1072:1078, 1/23SB/1172:1188 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_7AZO_264 | 1/23SB/1079:1082, 1/23SB/1169:1171 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_7AZO_265 | 1/23SB/1090:1100, 1/23SB/1155:1161 | No text annotation | ||
| IL_7AZO_267 | 1/23SB/1244:1246, 1/23SB/1296:1299 | Isolated cWS basepair | geometric IL_7RQB_045 NA | |
| IL_7AZO_268 | 1/23SB/1250:1254, 1/23SB/1289:1292 | No text annotation | geometric IL_7RQB_046 NA | |
| IL_7AZO_269 | 1/23SB/1256:1263, 1/23SB/1283:1287 | Kink-turn | geometric IL_7RQB_047 NA | |
| IL_7AZO_270 | 1/23SB/1267:1269, 1/23SB/1278:1279 | Single bulged A | geometric IL_7RQB_048 NA | |
| IL_7AZO_271 | 1/23SB/1311:1318, 1/23SB/2036:2042 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_049 NA | |
| IL_7AZO_272 | 1/23SB/1359:1362, 1/23SB/1652:1653 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_7AZO_273 | 1/23SB/1368:1372, 1/23SB/1380:1382 | C-loop | geometric IL_7RQB_051 NA | |
| IL_7AZO_274 | 1/23SB/1400:1404, 1/23SB/1425:1429 | UAA/GAN | geometric IL_7RQB_052 NA | |
| IL_7AZO_275 | 1/23SB/1406:1410, 1/23SB/1419:1423 | tSH-tHW-tHS | geometric IL_7RQB_053 NA | |
| IL_7AZO_276 | 1/23SB/1464:1465, 1/23SB/1632:1636 | No text annotation | geometric IL_7RQB_054 NA | |
| IL_7AZO_277 | 1/23SB/1466:1470, 1/23SB/1627:1631 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_7AZO_278 | 1/23SB/1482:1484, 1/23SB/1607:1610 | Isolated tWW turn | geometric IL_7RQB_056 NA | |
| IL_7AZO_279 | 1/23SB/1486:1489, 1/23SB/1601:1605 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_7AZO_280 | 1/23SB/1498:1500, 1/23SB/1512:1513 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7AZO_281 | 1/23SB/1501:1502, 1/23SB/1509:1511 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_7AZO_282 | 1/23SB/1519:1523, 1/23SB/1569:1572 | UAA/GAN variation | geometric IL_7RQB_060 NA | |
| IL_7AZO_283 | 1/23SB/1531:1532, 1/23SB/1555:1561 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_7AZO_284 | 1/23SB/1538:1540, 1/23SB/1548:1549 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_7AZO_285 | 1/23SB/1575:1579, 1/23SB/1590:1596 | No text annotation | geometric IL_7RQB_063 NA | |
| IL_7AZO_286 | 1/23SB/1701:1706, 1/23SB/2029:2031 | No text annotation | geometric IL_7RQB_064 NA | |
| IL_7AZO_287 | 1/23SB/1713:1715, 1/23SB/2020:2022 | Isolated tWW turn | geometric IL_7RQB_065 NA | |
| IL_7AZO_288 | 1/23SB/1716:1719, 1/23SB/2018:2019 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7AZO_366 | 1/23SB/1716:1724, 1/23SB/2015:2019 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_7AZO_289 | 1/23SB/1719:1724, 1/23SB/2015:2018 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_7AZO_290 | 1/23SB/1736:1741, 1/23SB/1746:1752 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_7AZO_291 | 1/23SB/1804:1805, 1/23SB/2005:2007 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_7AZO_292 | 1/23SB/1832:1838, 1/23SB/1847:1855 | Kink-turn related | geometric IL_7RQB_070 NA | |
| IL_7AZO_293 | 1/23SB/1871:1874, 1/23SB/1927:1928 | Minor groove platform, major groove intercalation | geometric IL_7RQB_071 NA | |
| IL_7AZO_294 | 1/23SB/1875:1876, 1/23SB/1923:1926 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
| IL_7AZO_295 | 1/23SB/1880:1883, 1/23SB/1918:1919 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7AZO_296 | 1/23SB/1885:1889, 1/23SB/1912:1916 | UAA/GAN with extra stack | geometric IL_7RQB_074 NA | |
| IL_7AZO_297 | 1/23SB/1890:1894, 1/23SB/1907:1911 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7AZO_298 | 1/23SB/1958:1959, 1/23SB/1989:1992 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_7AZO_299 | 1/23SB/1959:1970, 1/23SB/1986:1989 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_7AZO_300 | 1/23SB/2075:2077, 1/23SB/2632:2633 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_7AZO_301 | 1/23SB/2079:2082, 1/23SB/2626:2630 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_7AZO_302 | 1/23SB/2092:2094, 1/23SB/2457:2458 | Single bulged U | geometric IL_7A0S_075 IL_89505.4 | |
| IL_7AZO_303 | 1/23SB/2095:2096, 1/23SB/2453:2456 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7AZO_304 | 1/23SB/2106:2108, 1/23SB/2251:2254 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_7AZO_305 | 1/23SB/2110:2112, 1/23SB/2247:2249 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_7AZO_306 | 1/23SB/2132:2135, 1/23SB/2204:2207 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_85033.2 | |
| IL_7AZO_307 | 1/23SB/2135:2146, 1/23SB/2202:2204 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_7AZO_367 | 1/23SB/2135:2154, 1/23SB/2184:2204 | No text annotation | ||
| IL_7AZO_308 | 1/23SB/2147:2154, 1/23SB/2184:2201 | No text annotation | ||
| IL_7AZO_309 | 1/23SB/2154:2161, 1/23SB/2180:2184 | No text annotation | ||
| IL_7AZO_368 | 1/23SB/2154:2164, 1/23SB/2177:2184 | No text annotation | ||
| IL_7AZO_310 | 1/23SB/2312:2314, 1/23SB/2332:2336 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_61476.2 | |
| IL_7AZO_311 | 1/23SB/2365:2368, 1/23SB/2379:2382 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_7AZO_312 | 1/23SB/2416:2418, 1/23SB/2429:2430 | No text annotation | ||
| IL_7AZO_313 | 1/23SB/2468:2469, 1/23SB/2513:2515 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_7AZO_314 | 1/23SB/2469:2470, 1/23SB/2511:2513 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7AZO_315 | 1/23SB/2472:2474, 1/23SB/2508:2509 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_7AZO_316 | 1/23SB/2474:2476, 1/23SB/2504:2508 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_7AZO_317 | 1/23SB/2481:2485, 1/23SB/2495:2499 | Double sheared with non-canonical cWW | geometric IL_4WF9_093 IL_17948.2 | |
| IL_7AZO_318 | 1/23SB/2522:2523, 1/23SB/2595:2597 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_7AZO_319 | 1/23SB/2525:2527, 1/23SB/2589:2593 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_7AZO_320 | 1/23SB/2527:2528, 1/23SB/2586:2589 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
| IL_7AZO_321 | 1/23SB/2537:2538, 1/23SB/2555:2558 | Major groove platform with intercalation | geometric IL_7RQB_099 NA | |
| IL_7AZO_323 | 1/23SB/2606:2607, 1/23SB/2616:2618 | Single bulged A | geometric IL_2VPL_002 IL_31462.7 | |
| IL_7AZO_324 | 1/23SB/2651:2655, 1/23SB/2790:2798 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_7AZO_372 | 1/23SB/2667:2673, 1/23SB/2678:2683 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_7AZO_326 | 1/23SB/2695:2699, 1/23SB/2741:2743 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7AZO_327 | 1/23SB/2702:2706, 1/23SB/2734:2738 | No text annotation | geometric IL_7RQB_105 NA | |
| IL_7AZO_328 | 1/23SB/2710:2711, 1/23SB/2726:2730 | Multiple bulged bases | geometric IL_7RQB_106 NA | |
| IL_7AZO_329 | 1/23SB/2753:2758, 1/23SB/2778:2783 | UAA/GAN with extra cWW | geometric IL_7A0S_098 IL_49767.8 | |
| IL_7AZO_330 | 1/23SB/2851:2852, 1/23SB/2891:2893 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_7AZO_331 | 1/23SB/2856:2859, 1/23SB/2883:2887 | No text annotation | geometric IL_7RQB_109 NA | |
| IL_7AZO_332 | 1/23SB/2860:2865, 1/23SB/2878:2882 | tHS double platform | geometric IL_7RQB_110 NA | |
| IL_7AZO_333 | 1/5SA/19:20, 1/5SA/67:69 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_7AZO_334 | 1/5SA/25:30, 1/5SA/58:62 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_7AZO_335 | 1/5SA/32:33, 1/5SA/53:56 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7AZO_336 | 1/5SA/36:40, 1/5SA/46:50 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7AZO_337 | 1/5SA/73:81, 1/5SA/100:108 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7AZO_373 | 1/5SB/19:20, 1/5SB/67:69 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_7AZO_339 | 1/5SB/25:30, 1/5SB/58:62 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_7AZO_340 | 1/5SB/32:33, 1/5SB/53:56 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7AZO_341 | 1/5SB/36:40, 1/5SB/46:50 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7AZO_342 | 1/5SB/73:81, 1/5SB/100:108 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7AZO_379 | 1/ASIA/6:27, 1/ASIA/43:67 | No text annotation | ||
| IL_7AZO_374 | 1/ASIA/6:28, 1/ASIA/42:67 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7AZO_009 | tWH-tWH-tHW-tHW | ||
| IL_7AZO_344 | No text annotation | ||
| IL_7AZO_030 | No text annotation | ||
| IL_7AZO_039 | No text annotation | ||
| IL_7AZO_041 | Stack and bulge | ||
| IL_7AZO_054 | No text annotation | ||
| IL_7AZO_055 | No text annotation | ||
| IL_7AZO_352 | Single bulged G, near cWW | ||
| IL_7AZO_090 | No text annotation | ||
| IL_7AZO_354 | No text annotation | ||
| IL_7AZO_102 | No text annotation | ||
| IL_7AZO_114 | No text annotation | ||
| IL_7AZO_115 | No text annotation | ||
| IL_7AZO_124 | Major groove platform with extra cWW | ||
| IL_7AZO_130 | No text annotation | ||
| IL_7AZO_359 | No text annotation | ||
| IL_7AZO_204 | Isolated non-canonical cWW pair | ||
| IL_7AZO_207 | No text annotation | ||
| IL_7AZO_217 | Not an internal loop | ||
| IL_7AZO_230 | Major groove platform with extra cWW | ||
| IL_7AZO_364 | Isolated cWS basepair | ||
| IL_7AZO_365 | No text annotation | ||
| IL_7AZO_266 | No text annotation | ||
| IL_7AZO_369 | No text annotation | ||
| IL_7AZO_370 | No text annotation | ||
| IL_7AZO_371 | No text annotation | ||
| IL_7AZO_322 | Not an internal loop | ||
| IL_7AZO_325 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7AZO_338 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7AZO_001 | 1/16SA/692:693, 1/16SA/1002:1008, 1/16SA/1034:1036 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7AZO_055 | 1/16SA/692:698, 1/16SA/1000:1008, 1/16SA/1034:1036 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_7AZO_002 | 1/16SA/1215:1217, 1/16SA/1280:1283, 1/16SA/1383:1384 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_7AZO_056 | 1/16SA/1215:1217, 1/16SA/1280:1284, 1/16SA/1380:1384 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_7AZO_003 | 1/16SA/1301:1302, 1/16SA/1346:1354, 1/16SA/1361:1363 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_7AZO_004 | 1/16SA/1455:1458, 1/16SA/1480:1484, 1/16SA/1491:1497 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_7AZO_005 | 1/16SA/1559:1562, 1/16SA/1971:1977, 1/16SA/2000:2007 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7AZO_006 | 1/16SA/1566:1569, 1/16SA/1862:1864, 1/16SA/1964:1967 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7AZO_007 | 1/16SA/1578:1585, 1/16SA/1596:1607, 1/16SA/1848:1852 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_7AZO_008 | 1/16SA/1613:1616, 1/16SA/1673:1675, 1/16SA/1837:1842 | No text annotation | geometric J3_4LFB_005 J3_82572.1 | |
| J3_7AZO_057 | 1/16SA/1613:1620, 1/16SA/1672:1675, 1/16SA/1837:1842 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_7AZO_076 | 1/16SA/1627:1631, 1/16SA/1646:1652, 1/16SA/1661:1665 | No text annotation | ||
| J3_7AZO_010 | 1/16SA/1691:1696, 1/16SA/1735:1741, 1/16SA/1814:1820 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_7AZO_058 | 1/16SA/1701:1702, 1/16SA/1711:1714, 1/16SA/1727:1730 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7AZO_059 | 1/16SA/1744:1746, 1/16SA/1783:1786, 1/16SA/1808:1811 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_7AZO_012 | 1/16SA/1744:1746, 1/16SA/1783:1789, 1/16SA/1802:1811 | No text annotation | geometric J3_4LFB_018 J3_17791.2 | |
| J3_7AZO_013 | 1/16SA/1864:1868, 1/16SA/1923:1930, 1/16SA/1961:1964 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J3_7AZO_014 | 1/16SB/692:693, 1/16SB/1002:1008, 1/16SB/1034:1036 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7AZO_060 | 1/16SB/692:698, 1/16SB/1000:1008, 1/16SB/1034:1036 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_7AZO_015 | 1/16SB/1215:1217, 1/16SB/1280:1283, 1/16SB/1383:1384 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_7AZO_061 | 1/16SB/1215:1217, 1/16SB/1280:1284, 1/16SB/1380:1384 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_7AZO_016 | 1/16SB/1301:1302, 1/16SB/1346:1354, 1/16SB/1361:1363 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_7AZO_017 | 1/16SB/1455:1458, 1/16SB/1480:1484, 1/16SB/1491:1497 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_7AZO_018 | 1/16SB/1559:1562, 1/16SB/1971:1977, 1/16SB/2000:2007 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7AZO_019 | 1/16SB/1566:1569, 1/16SB/1862:1864, 1/16SB/1964:1967 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7AZO_020 | 1/16SB/1578:1585, 1/16SB/1596:1607, 1/16SB/1848:1852 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_7AZO_021 | 1/16SB/1613:1616, 1/16SB/1673:1675, 1/16SB/1837:1842 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_7AZO_077 | 1/16SB/1613:1620, 1/16SB/1672:1675, 1/16SB/1837:1842 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_7AZO_078 | 1/16SB/1626:1630, 1/16SB/1647:1652, 1/16SB/1661:1666 | No text annotation | ||
| J3_7AZO_022 | 1/16SB/1626:1630, 1/16SB/1647:1653, 1/16SB/1660:1665 | No text annotation | ||
| J3_7AZO_023 | 1/16SB/1691:1696, 1/16SB/1735:1741, 1/16SB/1814:1820 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_7AZO_079 | 1/16SB/1701:1702, 1/16SB/1711:1714, 1/16SB/1727:1730 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7AZO_025 | 1/16SB/1744:1746, 1/16SB/1783:1789, 1/16SB/1802:1811 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_7AZO_026 | 1/16SB/1864:1868, 1/16SB/1923:1930, 1/16SB/1961:1964 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_7AZO_027 | 1/23SA/30:31, 1/23SA/502:509, 1/23SA/536:537 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_7AZO_064 | 1/23SA/30:31, 1/23SA/502:512, 1/23SA/523:537 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_7AZO_065 | 1/23SA/32:35, 1/23SA/473:489, 1/23SA/496:501 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_7AZO_028 | 1/23SA/55:56, 1/23SA/69:75, 1/23SA/108:112 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_7AZO_029 | 1/23SA/259:263, 1/23SA/283:290, 1/23SA/397:398 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_7AZO_030 | 1/23SA/732:738, 1/23SA/822:824, 1/23SA/840:843 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7AZO_031 | 1/23SA/747:749, 1/23SA/781:785, 1/23SA/809:812 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7AZO_032 | 1/23SA/1102:1106, 1/23SA/1128:1135, 1/23SA/1150:1153 | No text annotation | ||
| J3_7AZO_033 | 1/23SA/1347:1352, 1/23SA/1674:1676, 1/23SA/1689:1692 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7AZO_034 | 1/23SA/1355:1358, 1/23SA/1654:1660, 1/23SA/1669:1671 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7AZO_035 | 1/23SA/1393:1399, 1/23SA/1430:1434, 1/23SA/1451:1452 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_7AZO_066 | 1/23SA/1473:1478, 1/23SA/1614:1615, 1/23SA/1618:1624 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_7AZO_036 | 1/23SA/2116:2118, 1/23SA/2221:2225, 1/23SA/2238:2243 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7AZO_067 | 1/23SA/2297:2299, 1/23SA/2399:2410, 1/23SA/2436:2442 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_7AZO_037 | 1/23SA/2310:2312, 1/23SA/2336:2338, 1/23SA/2347:2352 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7AZO_038 | 1/23SA/2532:2535, 1/23SA/2560:2562, 1/23SA/2576:2582 | No text annotation | homologous J3_8VTW_008 NA | |
| J3_7AZO_039 | 1/23SA/2827:2828, 1/23SA/2844:2849, 1/23SA/2895:2899 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_7AZO_040 | 1/23SB/30:31, 1/23SB/502:509, 1/23SB/536:537 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_7AZO_068 | 1/23SB/30:31, 1/23SB/502:512, 1/23SB/523:537 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_7AZO_069 | 1/23SB/32:35, 1/23SB/473:489, 1/23SB/496:501 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_7AZO_041 | 1/23SB/55:56, 1/23SB/69:75, 1/23SB/108:112 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_7AZO_042 | 1/23SB/259:263, 1/23SB/283:290, 1/23SB/397:398 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_7AZO_070 | 1/23SB/322:326, 1/23SB/341:350, 1/23SB/362:366 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_7AZO_043 | 1/23SB/732:738, 1/23SB/822:824, 1/23SB/840:843 | No text annotation | homologous J3_9DFE_007 J3_64189.2 | |
| J3_7AZO_044 | 1/23SB/747:749, 1/23SB/781:785, 1/23SB/809:812 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7AZO_045 | 1/23SB/1347:1352, 1/23SB/1674:1676, 1/23SB/1689:1692 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7AZO_046 | 1/23SB/1355:1358, 1/23SB/1654:1660, 1/23SB/1669:1671 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7AZO_047 | 1/23SB/1393:1399, 1/23SB/1430:1434, 1/23SB/1451:1452 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_7AZO_071 | 1/23SB/1473:1478, 1/23SB/1614:1615, 1/23SB/1618:1624 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_7AZO_048 | 1/23SB/2116:2118, 1/23SB/2221:2225, 1/23SB/2238:2243 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7AZO_072 | 1/23SB/2297:2299, 1/23SB/2399:2410, 1/23SB/2436:2442 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_7AZO_049 | 1/23SB/2310:2312, 1/23SB/2336:2338, 1/23SB/2347:2352 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7AZO_050 | 1/23SB/2532:2535, 1/23SB/2560:2562, 1/23SB/2576:2582 | No text annotation | homologous J3_8VTW_008 NA | |
| J3_7AZO_051 | 1/23SB/2805:2807, 1/23SB/2819:2824, 1/23SB/2902:2906 | No text annotation | homologous J3_4WF9_020 J3_24127.1 | |
| J3_7AZO_052 | 1/23SB/2827:2828, 1/23SB/2844:2849, 1/23SB/2895:2899 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_7AZO_053 | 1/5SA/13:18, 1/5SA/70:71, 1/5SA/110:112 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_7AZO_054 | 1/5SB/13:18, 1/5SB/70:71, 1/5SB/110:112 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_7AZO_080 | 1/ASIA/6:13, 1/ASIA/22:27, 1/ASIA/43:67 | No text annotation | ||
| J3_7AZO_075 | 1/TRNA/7:30, 1/TRNA/40:53, 1/TRNA/61:66 | No text annotation | ||
| J4_7AZO_001 | 1/16SA/754:761, 1/16SA/880:881, 1/16SA/927:930, 1/16SA/952:953 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_7AZO_002 | 1/16SA/782:784, 1/16SA/818:823, 1/16SA/846:850, 1/16SA/860:862 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_7AZO_003 | 1/16SA/1204:1206, 1/16SA/1393:1398, 1/16SA/1439:1450, 1/16SA/1502:1503 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_7AZO_004 | 1/16SB/754:761, 1/16SB/880:881, 1/16SB/927:930, 1/16SB/952:953 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_7AZO_032 | 1/16SB/782:784, 1/16SB/818:823, 1/16SB/846:850, 1/16SB/860:862 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_7AZO_006 | 1/16SB/1204:1206, 1/16SB/1393:1398, 1/16SB/1439:1450, 1/16SB/1502:1503 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_7AZO_007 | 1/23SA/258:259, 1/23SA/398:403, 1/23SA/427:434, 1/23SA/450:453 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_7AZO_008 | 1/23SA/322:326, 1/23SA/341:344, 1/23SA/348:350, 1/23SA/362:366 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_7AZO_009 | 1/23SA/1319:1325, 1/23SA/1343:1344, 1/23SA/1695:1698, 1/23SA/2034:2035 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_7AZO_010 | 1/23SA/1359:1363, 1/23SA/1387:1392, 1/23SA/1453:1454, 1/23SA/1646:1653 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_7AZO_011 | 1/23SA/1362:1363, 1/23SA/1387:1392, 1/23SA/1453:1454, 1/23SA/1646:1652 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_7AZO_012 | 1/23SA/1493:1495, 1/23SA/1516:1517, 1/23SA/1574:1575, 1/23SA/1596:1597 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_7AZO_013 | 1/23SA/1806:1810, 1/23SA/1822:1826, 1/23SA/1861:1864, 1/23SA/2000:2004 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7AZO_014 | 1/23SA/1867:1869, 1/23SA/1930:1931, 1/23SA/1949:1958, 1/23SA/1992:1997 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7AZO_015 | 1/23SA/2300:2304, 1/23SA/2358:2362, 1/23SA/2385:2387, 1/23SA/2396:2398 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_7AZO_016 | 1/23SA/2658:2661, 1/23SA/2689:2691, 1/23SA/2747:2751, 1/23SA/2785:2787 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_7AZO_017 | 1/23SB/258:259, 1/23SB/398:403, 1/23SB/427:434, 1/23SB/450:453 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_7AZO_018 | 1/23SB/322:326, 1/23SB/341:344, 1/23SB/348:350, 1/23SB/362:366 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_7AZO_019 | 1/23SB/1319:1325, 1/23SB/1343:1344, 1/23SB/1695:1698, 1/23SB/2034:2035 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_7AZO_020 | 1/23SB/1359:1363, 1/23SB/1387:1392, 1/23SB/1453:1454, 1/23SB/1646:1653 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_7AZO_021 | 1/23SB/1362:1363, 1/23SB/1387:1392, 1/23SB/1453:1454, 1/23SB/1646:1652 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_7AZO_022 | 1/23SB/1493:1495, 1/23SB/1516:1517, 1/23SB/1574:1575, 1/23SB/1596:1597 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_7AZO_023 | 1/23SB/1806:1810, 1/23SB/1822:1826, 1/23SB/1861:1864, 1/23SB/2000:2004 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_7AZO_024 | 1/23SB/1867:1869, 1/23SB/1930:1931, 1/23SB/1949:1958, 1/23SB/1992:1997 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7AZO_025 | 1/23SB/2300:2304, 1/23SB/2358:2362, 1/23SB/2385:2387, 1/23SB/2396:2398 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_7AZO_026 | 1/23SB/2658:2661, 1/23SB/2689:2691, 1/23SB/2747:2751, 1/23SB/2785:2787 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_7AZO_027 | 1/ESIA/7:10, 1/ESIA/25:27, 1/ESIA/43:49, 1/ESIA/65:66 | No text annotation | ||
| J4_7AZO_028 | 1/ESIB/7:10, 1/ESIB/25:27, 1/ESIB/43:49, 1/ESIB/65:66 | tRNA junction | homologous J4_5EL4_030 NA | |
| J4_7AZO_029 | 1/PSIA/7:10, 1/PSIA/25:27, 1/PSIA/43:49, 1/PSIA/65:66 | No text annotation | homologous J4_5J8B_014 NA | |
| J4_7AZO_030 | 1/PSIB/7:10, 1/PSIB/25:27, 1/PSIB/43:49, 1/PSIB/65:66 | tRNA junction | homologous J4_5WT1_002 J4_40477.1 | |
| J4_7AZO_033 | 1/TRNA/7:10, 1/TRNA/25:28, 1/TRNA/42:53, 1/TRNA/61:66 | No text annotation | ||
| J5_7AZO_001 | 1/16SA/682:685, 1/16SA/1044:1047, 1/16SA/1077:1082, 1/16SA/1122:1129, 1/16SA/1174:1177 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_7AZO_002 | 1/16SA/704:707, 1/16SA/745:752, 1/16SA/955:957, 1/16SA/978:980, 1/16SA/991:995 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_7AZO_003 | 1/16SB/682:685, 1/16SB/1044:1047, 1/16SB/1077:1082, 1/16SB/1122:1129, 1/16SB/1174:1177 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_7AZO_004 | 1/16SB/704:707, 1/16SB/745:752, 1/16SB/955:957, 1/16SB/978:980, 1/16SB/991:995 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_7AZO_005 | 1/23SA/46:53, 1/23SA/114:119, 1/23SA/128:129, 1/23SA/148:150, 1/23SA/166:168 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_7AZO_006 | 1/23SA/258:263, 1/23SA/283:290, 1/23SA/397:403, 1/23SA/427:434, 1/23SA/450:453 | No text annotation | ||
| J5_7AZO_007 | 1/23SA/558:560, 1/23SA/585:589, 1/23SA/602:604, 1/23SA/1310:1311, 1/23SA/2042:2043 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_7AZO_008 | 1/23SA/609:614, 1/23SA/717:720, 1/23SA/858:861, 1/23SA/1243:1244, 1/23SA/1299:1305 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_7AZO_009 | 1/23SA/626:629, 1/23SA/651:655, 1/23SA/662:665, 1/23SA/677:683, 1/23SA/700:705 | No text annotation | ||
| J5_7AZO_010 | 1/23SA/1724:1732, 1/23SA/1756:1757, 1/23SA/1785:1786, 1/23SA/1790:1798, 1/23SA/2013:2015 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_7AZO_011 | 1/23SA/2082:2089, 1/23SA/2461:2468, 1/23SA/2515:2522, 1/23SA/2597:2603, 1/23SA/2621:2626 | No text annotation | ||
| J5_7AZO_012 | 1/23SA/2099:2102, 1/23SA/2258:2261, 1/23SA/2273:2274, 1/23SA/2296:2297, 1/23SA/2442:2450 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_7AZO_013 | 1/23SB/46:53, 1/23SB/114:119, 1/23SB/128:129, 1/23SB/148:150, 1/23SB/166:168 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_7AZO_014 | 1/23SB/258:263, 1/23SB/283:290, 1/23SB/397:403, 1/23SB/427:434, 1/23SB/450:453 | No text annotation | ||
| J5_7AZO_015 | 1/23SB/558:560, 1/23SB/585:589, 1/23SB/602:604, 1/23SB/1310:1311, 1/23SB/2042:2043 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_7AZO_016 | 1/23SB/609:614, 1/23SB/717:720, 1/23SB/858:861, 1/23SB/1243:1244, 1/23SB/1299:1305 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_7AZO_017 | 1/23SB/1724:1732, 1/23SB/1756:1757, 1/23SB/1785:1786, 1/23SB/1790:1798, 1/23SB/2013:2015 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_7AZO_018 | 1/23SB/2082:2089, 1/23SB/2461:2468, 1/23SB/2515:2522, 1/23SB/2597:2603, 1/23SB/2621:2626 | No text annotation | ||
| J5_7AZO_019 | 1/23SB/2099:2102, 1/23SB/2258:2261, 1/23SB/2273:2274, 1/23SB/2296:2297, 1/23SB/2442:2450 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_7AZO_001 | 1/23SA/44:45, 1/23SA/169:173, 1/23SA/204:214, 1/23SA/221:225, 1/23SA/252:256, 1/23SA/455:462 | No text annotation | ||
| J6_7AZO_002 | 1/23SA/2099:2102, 1/23SA/2258:2261, 1/23SA/2273:2274, 1/23SA/2296:2299, 1/23SA/2399:2410, 1/23SA/2436:2450 | No text annotation | ||
| J6_7AZO_003 | 1/23SB/44:45, 1/23SB/169:173, 1/23SB/204:214, 1/23SB/221:225, 1/23SB/252:256, 1/23SB/455:462 | No text annotation | ||
| J6_7AZO_004 | 1/23SB/2099:2102, 1/23SB/2258:2261, 1/23SB/2273:2274, 1/23SB/2296:2299, 1/23SB/2399:2410, 1/23SB/2436:2450 | No text annotation | ||
| J7_7AZO_001 | 1/23SA/866:871, 1/23SA/884:885, 1/23SA/990:993, 1/23SA/1018:1024, 1/23SA/1035:1039, 1/23SA/1212:1213, 1/23SA/1233:1238 | No text annotation | ||
| J7_7AZO_003 | 1/23SB/866:871, 1/23SB/884:885, 1/23SB/990:993, 1/23SB/1018:1024, 1/23SB/1035:1039, 1/23SB/1212:1213, 1/23SB/1233:1238 | No text annotation | ||
| J8_7AZO_001 | 1/23SA/8:15, 1/23SA/552:558, 1/23SA/2043:2048, 1/23SA/2065:2068, 1/23SA/2640:2645, 1/23SA/2804:2807, 1/23SA/2819:2824, 1/23SA/2902:2907 | No text annotation | ||
| J8_7AZO_003 | 1/23SB/8:15, 1/23SB/552:558, 1/23SB/2043:2048, 1/23SB/2065:2068, 1/23SB/2640:2645, 1/23SB/2804:2807, 1/23SB/2819:2824, 1/23SB/2902:2907 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7AZO_009 | No text annotation | ||
| J3_7AZO_011 | No text annotation | ||
| J3_7AZO_062 | No text annotation | ||
| J3_7AZO_063 | No text annotation | ||
| J3_7AZO_024 | No text annotation | ||
| J3_7AZO_073 | No text annotation | ||
| J3_7AZO_074 | No text annotation | ||
| J4_7AZO_005 | No text annotation | ||
| J4_7AZO_031 | No text annotation | ||
| J7_7AZO_002 | No text annotation | ||
| J8_7AZO_002 | No text annotation |
Coloring options: