HL_7AZO_003

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1902

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZO|1|16SA|G|798
7AZO|1|16SA|G|799
7AZO|1|16SA|A|800
7AZO|1|16SA|A|801
7AZO|1|16SA|A|802
7AZO|1|16SA|C|803

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain L19A

50S ribosomal protein L19

Chain S20A

30S ribosomal protein S20