HL_7AZO_019

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_019 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0921

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7AZO|1|16SA|C|1485
7AZO|1|16SA|U|1486
7AZO|1|16SA|A|1487
7AZO|1|16SA|A|1488
7AZO|1|16SA|C|1489
7AZO|1|16SA|G|1490

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain MRNA

RNA (30-MER)

Chain S5A

30S ribosomal protein S5

Chain S8A

30S ribosomal protein S8