HL_7AZO_044

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

7AZO|1|16SB|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_044 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3843

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7AZO|1|16SB|C|1097
7AZO|1|16SB|C|1098
7AZO|1|16SB|G|1099
7AZO|1|16SB|A|1100
7AZO|1|16SB|C|1101
7AZO|1|16SB|G|1102
7AZO|1|16SB|A|1103
7AZO|1|16SB|G|1104
7AZO|1|16SB|G|1105

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16