HL_7AZO_046

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_046 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0914

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7AZO|1|16SB|G|1246
7AZO|1|16SB|C|1247
7AZO|1|16SB|U|1248
7AZO|1|16SB|C|1249
7AZO|1|16SB|A|1250
7AZO|1|16SB|A|1251
7AZO|1|16SB|C|1252

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16

Chain S4B

30S ribosomal protein S4