HL_7AZO_054

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_054 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2572

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZO|1|16SB|U|1636
7AZO|1|16SB|G|1637
7AZO|1|16SB|A|1638
7AZO|1|16SB|A|1639
7AZO|1|16SB|A|1640
7AZO|1|16SB|G|1641

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S14B

30S ribosomal protein S14 type Z

Chain S19B

30S ribosomal protein S19