HL_7AZO_064

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

7AZO|1|16SB|G|2140

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_064 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1133

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7AZO|1|16SB|C|2138
7AZO|1|16SB|G|2139
7AZO|1|16SB|G|2140
7AZO|1|16SB|MA6|2141
7AZO|1|16SB|MA6|2142
7AZO|1|16SB|G|2143

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA