HL_7AZO_072

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_072 not in the Motif Atlas

Geometric match to HL_7RQB_008

Geometric discrepancy: 0.062

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

7AZO|1|23SA|C|236
7AZO|1|23SA|G|237
7AZO|1|23SA|G|238
7AZO|1|23SA|C|239
7AZO|1|23SA|G|240
7AZO|1|23SA|A|241
7AZO|1|23SA|G|242

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ESIA

Transfer RNA; tRNA

Chain L15A

50S ribosomal protein L15

Chain L28A

50S ribosomal protein L28

Chain L35A

50S ribosomal protein L35