HL_7AZO_077

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

7AZO|1|23SA|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_077 not in the Motif Atlas

Geometric match to HL_7RQB_013

Geometric discrepancy: 0.0785

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZO|1|23SA|G|410
7AZO|1|23SA|U|411
7AZO|1|23SA|U|412
7AZO|1|23SA|C|413
7AZO|1|23SA|G|414
7AZO|1|23SA|U|415
7AZO|1|23SA|G|416
7AZO|1|23SA|G|417
7AZO|1|23SA|A|418
7AZO|1|23SA|G|419
7AZO|1|23SA|C|420

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L28A

50S ribosomal protein L28