HL_7AZO_085

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

7AZO|1|23SA|C|672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_085 not in the Motif Atlas

Geometric match to HL_6VMY_001

Geometric discrepancy: 0.2239

The information below is about HL_6VMY_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7AZO|1|23SA|C|668
7AZO|1|23SA|G|669
7AZO|1|23SA|A|670
7AZO|1|23SA|A|671
7AZO|1|23SA|C|672
7AZO|1|23SA|A|673
7AZO|1|23SA|G|674

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L33A

50S ribosomal protein L33

Chain L35A

50S ribosomal protein L35