HL_7AZO_129

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_129 not in the Motif Atlas

Geometric match to HL_7RQB_063

Geometric discrepancy: 0.0565

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7AZO|1|23SA|C|2609
7AZO|1|23SA|G|2610
7AZO|1|23SA|U|2611
7AZO|1|23SA|G|2612
7AZO|1|23SA|A|2613
7AZO|1|23SA|G|2614

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2

Chain PSIA

Transfer RNA; tRNA