HL_7AZO_133

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUCAAGC

Length

9 nucleotides

Bulged bases

7AZO|1|23SA|U|2812, 7AZO|1|23SA|C|2813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_133 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5516

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZO|1|23SA|G|2809
7AZO|1|23SA|C|2810
7AZO|1|23SA|G|2811
7AZO|1|23SA|U|2812
7AZO|1|23SA|C|2813
7AZO|1|23SA|A|2814
7AZO|1|23SA|A|2815
7AZO|1|23SA|G|2816
7AZO|1|23SA|C|2817

Current chains

Chain 23SA

23S rRNA

Nearby chains