HL_7AZO_138

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

7AZO|1|23SB|G|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_138 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0489

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7AZO|1|23SB|G|121
7AZO|1|23SB|G|122
7AZO|1|23SB|G|123
7AZO|1|23SB|A|124
7AZO|1|23SB|A|125
7AZO|1|23SB|C|126

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L23B

50S ribosomal protein L23

Chain L34B

50S ribosomal protein L34