HL_7AZO_163

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_163 not in the Motif Atlas

Geometric match to HL_4V9F_029

Geometric discrepancy: 0.0809

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SB|G|1026
7AZO|1|23SB|G|1027
7AZO|1|23SB|A|1028
7AZO|1|23SB|A|1029
7AZO|1|23SB|C|1030
7AZO|1|23SB|A|1031
7AZO|1|23SB|A|1032
7AZO|1|23SB|C|1033

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 5SB

5S ribosomal RNA; 5S rRNA

Chain L20B

50S ribosomal protein L20

Chain L30B

50S ribosomal protein L30