HL_7AZO_171

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7AZO|1|23SB|C|1542, 7AZO|1|23SB|U|1546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_171 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.2011

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7AZO|1|23SB|G|1541
7AZO|1|23SB|C|1542
7AZO|1|23SB|A|1543
7AZO|1|23SB|A|1544
7AZO|1|23SB|A|1545
7AZO|1|23SB|U|1546
7AZO|1|23SB|C|1547

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L2B

50S ribosomal protein L2