HL_7AZO_174

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7AZO|1|23SB|A|1663, 7AZO|1|23SB|A|1665, 7AZO|1|23SB|A|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_174 not in the Motif Atlas

Geometric match to HL_7A0S_040

Geometric discrepancy: 0.081

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7AZO|1|23SB|C|1661
7AZO|1|23SB|G|1662
7AZO|1|23SB|A|1663
7AZO|1|23SB|C|1664
7AZO|1|23SB|A|1665
7AZO|1|23SB|C|1666
7AZO|1|23SB|A|1667
7AZO|1|23SB|G|1668

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L22B

50S ribosomal protein L22

Chain L34B

50S ribosomal protein L34