HL_7AZO_222

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_222 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2269

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7AZO|1|PSIA|G|53
7AZO|1|PSIA|5MU|54
7AZO|1|PSIA|PSU|55
7AZO|1|PSIA|C|56
7AZO|1|PSIA|G|57
7AZO|1|PSIA|A|58
7AZO|1|PSIA|U|59
7AZO|1|PSIA|U|60
7AZO|1|PSIA|C|61

Current chains

Chain PSIA

Phe-tRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain L16A

50S ribosomal protein L16

Chain L5A

50S ribosomal protein L5