HL_7AZS_089

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

7AZS|1|23SA|A|830, 7AZS|1|23SA|A|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_089 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.1211

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7AZS|1|23SA|U|828
7AZS|1|23SA|G|829
7AZS|1|23SA|A|830
7AZS|1|23SA|A|831
7AZS|1|23SA|A|832
7AZS|1|23SA|A|833
7AZS|1|23SA|G|834

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2