HL_7AZS_111

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

7AZS|1|23SA|A|1814, 7AZS|1|23SA|C|1815, 7AZS|1|23SA|C|1816, 7AZS|1|23SA|A|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_111 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0589

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SA|U|1811
7AZS|1|23SA|U|1812
7AZS|1|23SA|U|1813
7AZS|1|23SA|A|1814
7AZS|1|23SA|C|1815
7AZS|1|23SA|C|1816
7AZS|1|23SA|A|1817
7AZS|1|23SA|A|1818
7AZS|1|23SA|A|1819
7AZS|1|23SA|A|1820
7AZS|1|23SA|A|1821

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2

Chain L34A

50S ribosomal protein L34