HL_7AZS_116

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7AZS|1|23SA|A|2055, 7AZS|1|23SA|A|2056, 7AZS|1|23SA|G|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_116 not in the Motif Atlas

Geometric match to HL_7RQB_050

Geometric discrepancy: 0.044

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SA|G|2052
7AZS|1|23SA|U|2053
7AZS|1|23SA|G|2054
7AZS|1|23SA|A|2055
7AZS|1|23SA|A|2056
7AZS|1|23SA|G|2057
7AZS|1|23SA|A|2058
7AZS|1|23SA|U|2059
7AZS|1|23SA|G|2060
7AZS|1|23SA|C|2061

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L21A

50S ribosomal protein L21

Chain L32A

50S ribosomal protein L32

Chain L3A

50S ribosomal protein L3