HL_7AZS_162

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

7AZS|1|23SB|U|1005, 7AZS|1|23SB|C|1008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_162 not in the Motif Atlas

Geometric match to HL_7RQB_027

Geometric discrepancy: 0.0917

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7AZS|1|23SB|C|1002
7AZS|1|23SB|G|1003
7AZS|1|23SB|A|1004
7AZS|1|23SB|U|1005
7AZS|1|23SB|A|1006
7AZS|1|23SB|A|1007
7AZS|1|23SB|C|1008
7AZS|1|23SB|G|1009

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 5SB

5S ribosomal RNA; 5S rRNA

Chain L16B

50S ribosomal protein L16