HL_7AZS_166

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZS_166 not in the Motif Atlas

Geometric match to HL_7RQB_033

Geometric discrepancy: 0.0626

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

7AZS|1|23SB|G|1330
7AZS|1|23SB|U|1331
7AZS|1|23SB|G|1332
7AZS|1|23SB|A|1333
7AZS|1|23SB|G|1334
7AZS|1|23SB|A|1335
7AZS|1|23SB|A|1336
7AZS|1|23SB|U|1337
7AZS|1|23SB|C|1338

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L17B

50S ribosomal protein L17

Chain L22B

50S ribosomal protein L22